PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021644478.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 300aa MW: 31759 Da PI: 9.3844

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021644478.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.4	1.4e-09	106	131	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ XP_021644478.1 106 KTRLCNKYNTAEGCKFGDKCHFAHGE 131 8***********************96 PP
2	zf-CCCH	37.5	4.1e-12	267	291	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg XP_021644478.1 267 FKTKLCENFAK-GSCTFGDRCHFAHG 291 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence
MEYGGGRKRG RAEAALNGNG GPKKTKQEME SFPTGIGSKS KPCTKFFSTS GCPFGEGCHF 60 LHYVPGGFKA VSQMLHLGGN PPIPPASRNA GVPPSFPDGA SPLAVKTRLC NKYNTAEGCK 120 FGDKCHFAHG EWELGKPPGP SFEDPRSIGP ISGRMGRQME PPHQGFGAAS SFGASATAKI 180 SIDASLAGAI IGKNGVNSKQ ICRLTGAKLS IREHETDPNL RNIELEGTFD QINQASAMVR 240 ELIGNVSQAS GAPMKNPVIH SGPTNNFKTK LCENFAKGSC TFGDRCHFAH GTEELRKPGM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	6	12	GRKRGRA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-55	C3H family protein