PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021644470.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 342aa MW: 37325.2 Da PI: 8.6854

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021644470.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	29.2	1.6e-09	148	173	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+lC+ + Ck+Gd+C+FaHg+ XP_021644470.1 148 KTRLCNKYNTAEGCKFGDKCHFAHGE 173 8***********************96 PP
2	zf-CCCH	37.2	4.8e-12	309	333	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt+lC +fa+ G C +GdrC+FaHg XP_021644470.1 309 FKTKLCENFAK-GSCTFGDRCHFAHG 333 69*******.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 342 aa Download sequence
MHKKFDIHQL HLNLILNSAS FFISVSHQSP PSPALFFSFS FSLFETLARY SLPCSYWWIS 60 NCNGVWRRSQ ERQGRGCFEW QWRSQENQAS TSGCPFGEGC HFLHYVPGGF KAVSQMLHLG 120 GNPPIPPASR NAGVPPSFPD GASPLAVKTR LCNKYNTAEG CKFGDKCHFA HGEWELGKPP 180 GPSFEDPRSI GPISGRMGRQ MEPPHQGFGA ASSFGASATA KISIDASLAG AIIGKNGVNS 240 KQICRLTGAK LSIREHETDP NLRNIELEGT FDQINQASAM VRELIGNVSQ ASGAPMKNPV 300 IHSGPTNNFK TKLCENFAKG SCTFGDRCHF AHGTEELRKP GM

Sequence ? help Back to Top

Protein Sequence Length: 342 aa Download sequence

MHKKFDIHQL HLNLILNSAS FFISVSHQSP PSPALFFSFS FSLFETLARY SLPCSYWWIS  60
NCNGVWRRSQ ERQGRGCFEW QWRSQENQAS TSGCPFGEGC HFLHYVPGGF KAVSQMLHLG  120
GNPPIPPASR NAGVPPSFPD GASPLAVKTR LCNKYNTAEG CKFGDKCHFA HGEWELGKPP  180
GPSFEDPRSI GPISGRMGRQ MEPPHQGFGA ASSFGASATA KISIDASLAG AIIGKNGVNS  240
KQICRLTGAK LSIREHETDP NLRNIELEGT FDQINQASAM VRELIGNVSQ ASGAPMKNPV  300
IHSGPTNNFK TKLCENFAKG SCTFGDRCHF AHGTEELRKP GM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06770.1	1e-55	C3H family protein