PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021643814.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 306aa MW: 34507.9 Da PI: 7.2144

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021643814.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	48	2e-15	223	248	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +ktelC+ +++tGtC+yGd C+FaHg XP_021643814.1 223 FKTELCNKWQETGTCPYGDHCQFAHG 248 79***********************9 PP
2	zf-CCCH	21	5.8e-07	261	286	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykte Cr +++ +C+yG rC+F H+ XP_021643814.1 261 YKTEVCRMVLAGDICPYGHRCHFRHV 286 9********55********996 PP

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence
MQNDAASTTA NDDLNIATES QEFLPNEVDF TSIYCPKSSH TLTPYLDSRF VTQQQDLINR 60 SALCLTRLRE AAREVESLRL ENAALRSVNR ELNNQLSFVI QSSVQKHCLS SDCNTTPFEI 120 LNGFHNLCNI GGDGGEELCE DEIPTSVKER ETVDATDRAS LPKSISVRSN GYLKTSQAGV 180 SKTRGATRPK TASPINGTQK VYVRGGKKEE KPLELEVYNQ GMFKTELCNK WQETGTCPYG 240 DHCQFAHGVE ELRPVIRHPR YKTEVCRMVL AGDICPYGHR CHFRHVLTEQ ERFMGHLKPR 300 AIKLER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68200.1	4e-87	C3H family protein