PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021643729.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 728aa MW: 79478.2 Da PI: 6.5077 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 306 | 326 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_021643729.1 306 PCPDFRK-GACRRGDMCEYAHG 326 8******.*************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 728 aa Download sequence |
MCCGWERLKL TPTRILPLIS SEESRPTNID MNHISVETED TFASLLELAA NNDAEGFKRS 60 IERDPVCVDE IGIWYSRQKG SKQMVNQHRT PLMVAATYGA VDVIRIILSL SDADVNRSCG 120 LDKSTALHCA ASGGAANAVD AVKLLLAAGG DPNLMDANGH HPIDVIAVPP KLQDMKYTLE 180 ELLATDGSVF ERNLRVSTAT ANSSSPPLSP SVENSSPLSS SDSPVKSKLN DVPVFSTSEK 240 KEYPVDPSLP DIKNSIYATD EFRMYSFKVR PCSRAYSHDW TECPFVHPGE NARRRDPRKF 300 HYSCVPCPDF RKGACRRGDM CEYAHGVFEC WLHPAQYRTR LCKDGTSCAR RVCFFAHTVE 360 ELRPLYLSTG SAVPSPRTST SGATAMDFAA AMSLLPGSPS SLSVMSPSPF TPPMSPSGNG 420 MSHSSVAWPQ PNVPALHLPG NNLQSSRLRS FFNARDIPAE DYSLLPDFDV QQQQLLNELS 480 SLTQPSLSNN SLNRSGRLKT LTPSNLDDLF SAESSSPRYA DQALAAAVFS PTHKSAVLNQ 540 FQQQQSMLSP INTNFSPKNV DHPLLQASLA SGRMSPRNVE PISPMSPRVS MLAQREKQQQ 600 QLRSLSSREL GSNSAATVGP HVNSWSKWGS SNGKPDWTVS ADELGKLRRS NSFELGNGEE 660 PDLSWVQSLV KESPTEMKEK LAMPNSSVAA GASSSEGLNM NSQIESVDHA LGAWIDQLHI 720 DQLVAQQN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41900.1 | 0.0 | C3H family protein |