PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021643121.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 295aa MW: 30756.9 Da PI: 9.8002 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 19.5 | 1.7e-06 | 36 | 59 | 2 | 25 |
-S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaH 25 k ++C f+ t C++G++C+F H XP_021643121.1 36 KSKPCTKFFSTAGCPFGESCHFLH 59 7789******************** PP | |||||||
2 | zf-CCCH | 26.8 | 8.8e-09 | 101 | 126 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k +lC+ + Ck+Gd+C+FaHg+ XP_021643121.1 101 KSRLCNKYNTAEGCKFGDKCHFAHGE 126 679*********************96 PP | |||||||
3 | zf-CCCH | 30.6 | 5.9e-10 | 262 | 286 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC +f + G C +G rC+FaHg XP_021643121.1 262 YKTKLCENFTK-GSCTFGQRCHFAHG 286 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 295 aa Download sequence |
MMNAKKRGKP DAFNANGGFK KSKQEMDSLS TGVGSKSKPC TKFFSTAGCP FGESCHFLHY 60 VPGGYNAVAQ MMNLGPAVTP VSRNMAAPPA IPNGSAQSAV KSRLCNKYNT AEGCKFGDKC 120 HFAHGEWELG KPIAPSHDDP RAIGTIPGRM GGRMEPPLPG PAASFGASAT AKISVEASLA 180 GAIIGKGGVN SKQICRQTGA KLSIREHETD PNLRNIEFEG SFEQIKQASA MVSELIASVG 240 SANAPAKATG ASGGHAHPGS NYKTKLCENF TKGSCTFGQR CHFAHGAAEL RKSGV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 4e-68 | C3H family protein |