PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021641605.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 422aa MW: 47440.1 Da PI: 4.9199

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021641605.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	26.3	1.5e-08	17	59	4	40
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 r C+ ++ k++++fC ++ +lC++C ++ H+ H++v XP_021641605.1 17 RPCDGCSCKRARWFCAADDAFLCQTCDESVHSAnqlasrHDRV 59 78*****************************657788888776 PP
2	CCT	68.9	1.3e-23	366	409	1	44
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 Rea++lRY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++ XP_021641605.1 366 REARVLRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 409 9*****************************************87 PP

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence
MIIERKAANA LAGKTVRPCD GCSCKRARWF CAADDAFLCQ TCDESVHSAN QLASRHDRVR 60 LESASSKTSG SMNTVVSPPA WIQGFTRKAR TPRHNNNKSI LVYQQLKDEE KVLMNPLPLV 120 PEIGCEEEGH TVADEDEDQC PCRVPVFDPF AAELCTDDMI TCKGTEIAMA DEEGNMIFDD 180 SGQEGTTSDL DNLPGFLPSD MDLAEFAADV ENLLGIGFED ASPDIKDLGL LDCKEEDDEK 240 FEDKVVKVKD EQDQLEAIFD WNFNNYESPI TGDEEEEEKA VPVADTTVMN SGNKKEISRN 300 VSLRLNYEAV ITAWASHGSP WTTGSRPELS PDDCWPDCMD ICHNGHHHHR PYGGLGEHAG 360 RGNAGREARV LRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS FMGTHAFPYI 420 NK

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence

MIIERKAANA LAGKTVRPCD GCSCKRARWF CAADDAFLCQ TCDESVHSAN QLASRHDRVR  60
LESASSKTSG SMNTVVSPPA WIQGFTRKAR TPRHNNNKSI LVYQQLKDEE KVLMNPLPLV  120
PEIGCEEEGH TVADEDEDQC PCRVPVFDPF AAELCTDDMI TCKGTEIAMA DEEGNMIFDD  180
SGQEGTTSDL DNLPGFLPSD MDLAEFAADV ENLLGIGFED ASPDIKDLGL LDCKEEDDEK  240
FEDKVVKVKD EQDQLEAIFD WNFNNYESPI TGDEEEEEKA VPVADTTVMN SGNKKEISRN  300
VSLRLNYEAV ITAWASHGSP WTTGSRPELS PDDCWPDCMD ICHNGHHHHR PYGGLGEHAG  360
RGNAGREARV LRYREKRRTR LFSKKIRYEV RKLNAEKRPR MKGRFVKRTS FMGTHAFPYI  420
NK

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	377	393	RRTRLFSKKIRYEVRKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G25440.1	5e-91	CO-like family protein