PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021641091.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 277aa MW: 30884.6 Da PI: 9.6289

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021641091.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	28.3	3.1e-09	53	77	1	26
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt lC f+ G+C+yG++C++aHg XP_021641091.1 53 FKTQLCAKFRL-GYCSYGSKCSYAHG 77 69*******.***********8 PP
2	zf-CCCH	22.2	2.5e-07	115	135	6	26
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 Cr f+ +C yGd+C+F H+ XP_021641091.1 115 CRMFYSRKECTYGDKCRFLHV 135 5555555*************6 PP
3	zf-CCCH	33.9	5.4e-11	176	201	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 k ++C+++ rtG C+yG C+FaHg+ XP_021641091.1 176 KKRPCNNWERTGSCPYGKICCFAHGQ 201 789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence
MLQLRPQFPI ENKEYQDLSQ NGDPLCKIPR TCEIAAPCPK MPVATNNAVT GSFKTQLCAK 60 FRLGYCSYGS KCSYAHGSDE LRKRLPNVQA PVVNEVGLSR TWNGFYRAVD PSNLCRMFYS 120 RKECTYGDKC RFLHVSPDNI KRELGACRES LSIRTGTTGF SGFHRSGCAS SKPVIKKRPC 180 NNWERTGSCP YGKICCFAHG QAELEKPIGR IGLFSGFVPT NTSKTLPISK NVIGTSYQLQ 240 VRGMKCAFKK RAAQKISGIY ADWIEDMPSL YDSLNKA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19360.1	3e-31	C3H family protein