PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021640832.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 722aa MW: 78457.9 Da PI: 6.3789 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 22.3 | 2.4e-07 | 300 | 320 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C++f++ G C++Gd C +aHg XP_021640832.1 300 PCPDFRK-GACRRGDMCEYAHG 320 8******.*************9 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 722 aa Download sequence |
MNHLTVEIGD SFSCLLDLAA NNDVEGFKLL IERDASSIDE VGYWYGRQKG SKNIVLDHRT 60 PLMVAATYGS LDVLKFILAH TDADINLSCG MDKATALHCA ASGGPLNAVD VVKLLLSAGA 120 DPNCLDGNGY RPIDVIIVPP KLHSLRVALE ELLSNTVSNG SSGEHNSNGF VGEHSSNVSV 180 GDCSHLLMSL RTSNTSSPTL SSSPENGSPS SPSVLVSSPM ASKYNDLPIS TAEKKEYPID 240 PSLPDIKNSI YATDEFRMYS FKVRPCSRAY SHDWTECPFV HPGENARRRD PRKFHYSCVP 300 CPDFRKGACR RGDMCEYAHG VFECWLHPAQ YRTRLCKDGI SCNRRVCFFA HTPEELRPLY 360 VSTGSAVPSP RTSASAASVM DMAAALSLLP GSPSSVSAMS PNPFNQPMSP TATSISHSSV 420 AWPQPNVPTL HLPGSNLQSS RLRSSLSARD IPPEDLNLLP DFDARQQILN DLTCFSQSRN 480 NSASFNRSGW SKVLTPSNLE ELFSAEISSP RYADQAAAVF SPTHKSAVRN QFQQQQSMLS 540 PINTTVFSPM NVEHPLLQAS FGVGSPGRMS PRSVEPISPM GSRLSAFAQR EKQHQQLRSL 600 SSRELGSNNP AASIVGSPAN SWTKWGSPNG KLDWSVNGGD EQGRLRRSSS FELGNNGEEP 660 DLSWVQSLVK ESPPEMLKEK YGVPVSGAAS SGEGLNPNSQ IDSVLESWLE QMQLDQQQEL 720 VV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G41900.1 | 1e-170 | C3H family protein |