PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021640223.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 179aa MW: 20261.8 Da PI: 5.4242 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 50 | 3.9e-16 | 14 | 57 | 2 | 45 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 +i k vtf+kRr+g+l KA EL+vLC+aevav+ f + gk XP_021640223.1 14 KITKKQSLDVTFAKRRQGLLNKAGELCVLCGAEVAVVGFYPAGK 57 677788889****************************9988876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence |
MANEGRRRKI EMKKITKKQS LDVTFAKRRQ GLLNKAGELC VLCGAEVAVV GFYPAGKPFA 60 FGHPSVDNVI DRCLSDSNNN GNVNADQVEK SRKQYMEALA KLEHQKKLLD SISKDHEKEA 120 ASGRDTFWWD DPVESMDSEE LEQYAASLEE LKKNVLVRVD EMEKANNSPS RFLLLEDDQ |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 2e-38 | M-type_MADS family protein |