PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639544.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

ARF

Protein Properties

Length: 470aa MW: 53311.3 Da PI: 8.2276

Description

ARF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639544.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	65.9	5.9e-21	130	232	1	98
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--..TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk..egDfvvFkldgr 87 f+k+lt sdv+k+g l + k+aee+ + +++ ++l+ +d++g++W +++iyr++++r++lt+GW eFv +++L ++ +++F ++ XP_021639544.1 130 FQKTLTASDVSKHGSLFIYQKHAEEClppldmS-QEPPCQQLVAKDLHGKQWHFQHIYRGNPKRHLLTTGWGEFVGSKKLAkaTRSVLIFL--RE 221 99***************************54.4444569999**********************************97788899999..56 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++el+++v++ XP_021639544.1 222 ENGELRIGVRK 232 99999999986 PP
2	Auxin_resp	62.3	1.9e-21	256	350	2	83
Auxin_resp 2 ahaastksvFevvYnPrast.............seFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ha+ t++ F v+Y+Pr+st s+F+v+v+ +++a k ++ GmRf m+fe+e+ e+++ G +v +d ++rWp+S+Wrs+k XP_021639544.1 256 YHAMMTRNHFYVIYRPRTSTlkiifniifrttgSQFIVSVNMYREAQKPNLFNGMRFMMKFEGEEGCEKSFNGRIVHFQDNISSRWPDSEWRSIK 350 5677777777777777766444444444444459**********************************************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 470 aa Download sequence
MASVAMNHST EGHPQDGGCN DALYKQLWHA CAGPLVSLPF VGEQVYYFPQ GHIEHELGAL 60 VHQDLEQQMP PSNLPSKILC KVIKVDLQAD PKTDQVCAYI SLLPEPDQRE VPGPNPEILK 120 PAERCMIHSF QKTLTASDVS KHGSLFIYQK HAEECLPPLD MSQEPPCQQL VAKDLHGKQW 180 HFQHIYRGNP KRHLLTTGWG EFVGSKKLAK ATRSVLIFLR EENGELRIGV RKPMGQETDV 240 VKHGESICSG ILSNAYHAMM TRNHFYVIYR PRTSTLKIIF NIIFRTTGSQ FIVSVNMYRE 300 AQKPNLFNGM RFMMKFEGEE GCEKSFNGRI VHFQDNISSR WPDSEWRSIK VQWDKPCPPF 360 LPERVSPWEL ELSSQPKQRK KRAQVGFIGD ASQLKRTKVQ TPDQIPVLLS AMALPPNCNN 420 SQITDMISMF HIHYMGSLMW VDKALGSLSL ITSFWGLPPS ISSNQPENVV

Sequence ? help Back to Top

Protein Sequence Length: 470 aa Download sequence

MASVAMNHST EGHPQDGGCN DALYKQLWHA CAGPLVSLPF VGEQVYYFPQ GHIEHELGAL  60
VHQDLEQQMP PSNLPSKILC KVIKVDLQAD PKTDQVCAYI SLLPEPDQRE VPGPNPEILK  120
PAERCMIHSF QKTLTASDVS KHGSLFIYQK HAEECLPPLD MSQEPPCQQL VAKDLHGKQW  180
HFQHIYRGNP KRHLLTTGWG EFVGSKKLAK ATRSVLIFLR EENGELRIGV RKPMGQETDV  240
VKHGESICSG ILSNAYHAMM TRNHFYVIYR PRTSTLKIIF NIIFRTTGSQ FIVSVNMYRE  300
AQKPNLFNGM RFMMKFEGEE GCEKSFNGRI VHFQDNISSR WPDSEWRSIK VQWDKPCPPF  360
LPERVSPWEL ELSSQPKQRK KRAQVGFIGD ASQLKRTKVQ TPDQIPVLLS AMALPPNCNN  420
SQITDMISMF HIHYMGSLMW VDKALGSLSL ITSFWGLPPS ISSNQPENVV

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G59750.4	1e-139	ARF family protein