PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021639541.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | ARF | ||||||||
Protein Properties | Length: 706aa MW: 79839.5 Da PI: 5.9729 | ||||||||
Description | ARF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 65 | 1.1e-20 | 130 | 232 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--..TT-EEEEEE-SS CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLk..egDfvvFkldgr 87 f+k+lt sdv+k+g l + k+aee+ + +++ ++l+ +d++g++W +++iyr++++r++lt+GW eFv +++L ++ +++F ++ XP_021639541.1 130 FQKTLTASDVSKHGSLFIYQKHAEEClppldmS-QEPPCQQLVAKDLHGKQWHFQHIYRGNPKRHLLTTGWGEFVGSKKLAkaTRSVLIFL--RE 221 99*****************************54.4444569999************************************97788899999..56 PP SEE..EEEEE- CS B3 88 sefelvvkvfr 98 +++el+++v++ XP_021639541.1 222 ENGELRIGVRK 232 99999999986 PP | |||||||
2 | Auxin_resp | 61.4 | 3.6e-21 | 256 | 350 | 2 | 83 |
Auxin_resp 2 ahaastksvFevvYnPrast.............seFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 ha+ t++ F v+Y+Pr+st s+F+v+v+ +++a k ++ GmRf m+fe+e+ e+++ G +v +d ++rWp+S+Wrs+k XP_021639541.1 256 YHAMMTRNHFYVIYRPRTSTlkiifniifrttgSQFIVSVNMYREAQKPNLFNGMRFMMKFEGEEGCEKSFNGRIVHFQDNISSRWPDSEWRSIK 350 5677777777777777766444444444444449**********************************************************985 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 706 aa Download sequence |
MASVAMNHST EGHPQDGGCN DALYKQLWHA CAGPLVSLPF VGEQVYYFPQ GHIEHELGAL 60 VHQDLEQQMP PSNLPSKILC KVIKVDLQAD PKTDQVCAYI SLLPEPDQRE VPGPNPEILK 120 PAERCMIHSF QKTLTASDVS KHGSLFIYQK HAEECLPPLD MSQEPPCQQL VAKDLHGKQW 180 HFQHIYRGNP KRHLLTTGWG EFVGSKKLAK ATRSVLIFLR EENGELRIGV RKPMGQETDV 240 VKHGESICSG ILSNAYHAMM TRNHFYVIYR PRTSTLKIIF NIIFRTTGSQ FIVSVNMYRE 300 AQKPNLFNGM RFMMKFEGEE GCEKSFNGRI VHFQDNISSR WPDSEWRSIK VQWDKPCPPF 360 LPERVSPWEL ELSSQPKQRK KRAQVGFIGD ASQLKRTKGK GKFKEICSTV YEKGECSNVI 420 QGNFIAQSTR AHVSERDGTE KEGETEMNIC VANAHGDVIP QENSGPTEKN GHRDGIGVID 480 DETNVQCQDK EYDGILDESL TDIEKRGPTT PASAEYPILP EIHTLDVLPS DSPVFPTSQG 540 ERVEYSRQYS LDDCYEDFYG FQVLQTHVSD LQRIYCIEGK FWENSRFQRA YLISAVLEGL 600 GLALSLKDRT WKSLSPDELQ TIIQGIEDAL NAGFKLDCLK PVVQKAKAVS GSFDTRCQFE 660 ALEEEKSSLE TRLQNVICQL QTLDIELRSS TEGLDFESKC LANIFD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G59750.4 | 1e-136 | ARF family protein |