PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021639474.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

CO-like

Protein Properties

Length: 469aa MW: 51683.4 Da PI: 5.5026

Description

CO-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021639474.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-B_box	18.9	3.2e-06	2	42	3	37
zf-B_box 3 erkCpeHeekelqlfCedCqqllCedClleeHkg......H 37 e+ C+ ++ ++ +C++++ lC +C H+ H XP_021639474.1 2 EPLCEFCGTVRAVVYCKSDSARLCLQCDGFVHSAnslsrrH 42 689****99**************98888544555555 PP
2	zf-B_box	21.5	4.7e-07	46	73	4	31
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedCll 31 C+++++++++l C d++ +C++C XP_021639474.1 46 LLCDKCNSQPAILRCLDDKLSICQTCDW 73 57************************75 PP
3	CCT	41.6	4.4e-15	428	456	16	44
CCT 16 kFeKkirYesRKavAesRpRvKGrFvkqa 44 +F K+irY+sRKa+A++R+RvKGrFvk+ XP_021639474.1 428 RFGKQIRYASRKARADTRKRVKGRFVKAG 456 69************************985 PP

Sequence ? help Back to Top
Protein Sequence Length: 469 aa Download sequence
MEPLCEFCGT VRAVVYCKSD SARLCLQCDG FVHSANSLSR RHPRSLLCDK CNSQPAILRC 60 LDDKLSICQT CDWNNANGCS SLGHRLQALS CYTGRPSLVE FSRIWSSVLD ASPSTTTSYD 120 PAELGTSLAS LPGNENSMIS SCLKHEDNEG CFGLLTSKLN ELEPWMGPPT VDPLGPNSIP 180 YCRDQVSLLP EDSNMPKGCC NFKDLEIHDN EDLCEGLNMD DVALMNFENG DEIFGCPQGH 240 TRYQLGDVGK DCILMEKNLS VTESNNGPVE NAREVTSSGQ QDCITFQSPQ VACSAGMMQA 300 MNGSTSCLFM NPSCNRSINL GFPTGTGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLA 360 SESPWELNLE TSCPQARDKA KMRYNEKKKT RTYVCDSTPI TFQVIVCISR GFQLVGSDRF 420 CKIVMFYRFG KQIRYASRKA RADTRKRVKG RFVKAGEAYD YDPLVPRNF

Sequence ? help Back to Top

Protein Sequence Length: 469 aa Download sequence

MEPLCEFCGT VRAVVYCKSD SARLCLQCDG FVHSANSLSR RHPRSLLCDK CNSQPAILRC  60
LDDKLSICQT CDWNNANGCS SLGHRLQALS CYTGRPSLVE FSRIWSSVLD ASPSTTTSYD  120
PAELGTSLAS LPGNENSMIS SCLKHEDNEG CFGLLTSKLN ELEPWMGPPT VDPLGPNSIP  180
YCRDQVSLLP EDSNMPKGCC NFKDLEIHDN EDLCEGLNMD DVALMNFENG DEIFGCPQGH  240
TRYQLGDVGK DCILMEKNLS VTESNNGPVE NAREVTSSGQ QDCITFQSPQ VACSAGMMQA  300
MNGSTSCLFM NPSCNRSINL GFPTGTGQVH SSISLSLSNI TGESSAADYQ DCGLSPVFLA  360
SESPWELNLE TSCPQARDKA KMRYNEKKKT RTYVCDSTPI TFQVIVCISR GFQLVGSDRF  420
CKIVMFYRFG KQIRYASRKA RADTRKRVKG RFVKAGEAYD YDPLVPRNF

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21880.1	2e-97	CO-like family protein