PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021639393.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 474aa MW: 50808.4 Da PI: 8.8394 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.5 | 3.5e-11 | 49 | 75 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++ + C +++rtG+C yG+rC+++H++ XP_021639393.1 49 PGVPDCVYYMRTGFCGYGGRCRYNHPR 75 57899********************96 PP | |||||||
2 | zf-CCCH | 40.4 | 4.8e-13 | 96 | 120 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+f+++tGtCk+G++CkF+H++ XP_021639393.1 96 EPPCQFYLKTGTCKFGASCKFHHPK 120 79*********************96 PP | |||||||
3 | zf-CCCH | 36.9 | 6.2e-12 | 142 | 166 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 +++C+++++tG+Ck+G +CkF+H++ XP_021639393.1 142 EKECSYYLKTGQCKFGITCKFHHPQ 166 689********************97 PP | |||||||
4 | zf-CCCH | 36.5 | 8.2e-12 | 295 | 321 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++++rtG Ck+G++C+++H++ XP_021639393.1 295 PGEPECQYYLRTGDCKFGSSCRYHHPR 321 5799*********************96 PP | |||||||
5 | zf-CCCH | 34.6 | 3.3e-11 | 342 | 367 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 + +C f++++G Ck+G++CkF H++ XP_021639393.1 342 GVQPCAFYLQNGNCKFGATCKFDHPM 367 6789********************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 474 aa Download sequence |
MELYGRNHAR NGSQSGQQPE WSPVRGETGL EESMWRLGLA SSELYPERPG VPDCVYYMRT 60 GFCGYGGRCR YNHPRNRAAV EAAVRATGEY PERVGEPPCQ FYLKTGTCKF GASCKFHHPK 120 HGGGSLSHFP LNTHGYPLRL GEKECSYYLK TGQCKFGITC KFHHPQPAGT SLPESAPHFY 180 QPVQSPSITI PDQYGGGSTS LRVRPPVLPG SYVQGAYGPV LFSPGVVPIP GWSPYSAPVS 240 PVLSPGAQPA VGATSLYGVT QLSSSAPALA GPYASPSSVA GLSSGTKEQA FPERPGEPEC 300 QYYLRTGDCK FGSSCRYHHP RDRVVPRTNC VLSPLGLPLR PGVQPCAFYL QNGNCKFGAT 360 CKFDHPMATV RYSPSTSSLI DMPVSPYPVG SLLATLVPSS SSAELRPELI GVTKKDPYLS 420 RIPPSGNTSS NSVGLIFSQT GSLPLPELQH SIQSSVPLAG GRSTRQGGEV RHSS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G47850.1 | 0.0 | C3H family protein |