PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021639088.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | LBD | ||||||||
Protein Properties | Length: 239aa MW: 26111.1 Da PI: 7.8927 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.2 | 3.9e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++a+pe++r+++++sl++eA+ r+ +Pv+Gavg++++++++++++ XP_021639088.1 2 SCNGCRVLRKGCSETCILRPCLqwiesPEAQGHATVFVAKFFGRAGLMSFISAVPESQRPALFQSLLFEACGRTVNPVNGAVGLLWTGNWHVCEA 96 6********************************************************************************************** PP DUF260 91 kaelall 97 ++e++l+ XP_021639088.1 97 AVETVLR 103 *998876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 239 aa Download sequence |
MSCNGCRVLR KGCSETCILR PCLQWIESPE AQGHATVFVA KFFGRAGLMS FISAVPESQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCEAAVET VLRGGTLRPM PELLAAGGSP 120 SPASDEASEV EVACTDMWKL QDPNPIHHSR FSNSRSKVSP KRKIMDEPVN IVKQQQFQLQ 180 LPKNDLDLRL MQIFSPKTSP CKPENLRLGS PSMNSEESVT TTITCLESGP GGKLLNLFV |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49940.1 | 8e-95 | LBD family protein |