PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021638599.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 478aa MW: 53864.3 Da PI: 5.2868 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 35.9 | 1.2e-11 | 149 | 171 | 4 | 26 |
---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHg 26 e C+++++tGtCk+G +CkF+H+ XP_021638599.1 149 EDCSYYMKTGTCKFGFNCKFNHP 171 89********************9 PP | |||||||
2 | zf-CCCH | 31.8 | 2.4e-10 | 194 | 219 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++ +C++++rtG CkyG C+++H++ XP_021638599.1 194 GQTECKYYLRTGGCKYGKACRYNHSR 219 6789********************95 PP | |||||||
3 | zf-CCCH | 39.8 | 7.5e-13 | 247 | 271 | 2 | 26 |
-S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHg 26 ++++C++++r+G CkyG++C+F+H+ XP_021638599.1 247 GEKECPYYMRNGSCKYGANCRFNHP 271 7899********************9 PP | |||||||
4 | zf-CCCH | 28.6 | 2.4e-09 | 380 | 406 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+ ++Ck++H++ XP_021638599.1 380 PGQPECNYYMKTGDCKFKSNCKYHHPK 406 5789*********************96 PP | |||||||
5 | zf-CCCH | 32.4 | 1.5e-10 | 430 | 451 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C++++r+G+Ck+G+ CkF H+ XP_021638599.1 430 VCSYYSRYGICKFGPACKFDHP 451 6********************9 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 478 aa Download sequence |
MEYSEASNFL TSTADTNPKL EFQLSLPSSN ADIDSDLTLE LPKKLEKKQL YLKEGGREDE 60 EVAPVTVEVE EVHEELGKQL HLKEYEDDKH LIELNQNEDF KSVESSGREE EHNRINKEDN 120 DNDNDGVEEE DERSNGDTRH QYPVRPEAED CSYYMKTGTC KFGFNCKFNH PVRRKNQATR 180 EKVKESEEPT ESPGQTECKY YLRTGGCKYG KACRYNHSRE KPPMLPAKTT VSPVYDFNFL 240 GLPIRPGEKE CPYYMRNGSC KYGANCRFNH PDPTTVGSDP PSAFNNGGSA ALQSSSQSSV 300 ATWSSPRGLN ENAPFVPIMF SATQGVTSQN PEWNGYQAPI YSPERSIHLA PAYVISNPAT 360 DNNVYAHQQH TLVDEFPERP GQPECNYYMK TGDCKFKSNC KYHHPKNQIP KSSPCALSDK 420 GLPLRPGQHV CSYYSRYGIC KFGPACKFDH PTQPALMTGY AEDQTRTSET GNESDTAI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G48440.1 | 1e-133 | C3H family protein |