PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_021638599.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
Family C3H
Protein Properties Length: 478aa    MW: 53864.3 Da    PI: 5.2868
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_021638599.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH35.91.2e-11149171426
                     ---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                     e C+++++tGtCk+G +CkF+H+
  XP_021638599.1 149 EDCSYYMKTGTCKFGFNCKFNHP 171
                     89********************9 PP

2zf-CCCH31.82.4e-10194219227
                     -S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                     ++ +C++++rtG CkyG  C+++H++
  XP_021638599.1 194 GQTECKYYLRTGGCKYGKACRYNHSR 219
                     6789********************95 PP

3zf-CCCH39.87.5e-13247271226
                     -S---SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                     ++++C++++r+G CkyG++C+F+H+
  XP_021638599.1 247 GEKECPYYMRNGSCKYGANCRFNHP 271
                     7899********************9 PP

4zf-CCCH28.62.4e-09380406127
                     --S---SGGGGTS--TTTTT-SS-SSS CS
         zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                     +++++C+++++tG Ck+ ++Ck++H++
  XP_021638599.1 380 PGQPECNYYMKTGDCKFKSNCKYHHPK 406
                     5789*********************96 PP

5zf-CCCH32.41.5e-10430451526
                     --SGGGGTS--TTTTT-SS-SS CS
         zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                      C++++r+G+Ck+G+ CkF H+
  XP_021638599.1 430 VCSYYSRYGICKFGPACKFDHP 451
                     6********************9 PP

Sequence ? help Back to Top
Protein Sequence    Length: 478 aa     Download sequence    
MEYSEASNFL TSTADTNPKL EFQLSLPSSN ADIDSDLTLE LPKKLEKKQL YLKEGGREDE  60
EVAPVTVEVE EVHEELGKQL HLKEYEDDKH LIELNQNEDF KSVESSGREE EHNRINKEDN  120
DNDNDGVEEE DERSNGDTRH QYPVRPEAED CSYYMKTGTC KFGFNCKFNH PVRRKNQATR  180
EKVKESEEPT ESPGQTECKY YLRTGGCKYG KACRYNHSRE KPPMLPAKTT VSPVYDFNFL  240
GLPIRPGEKE CPYYMRNGSC KYGANCRFNH PDPTTVGSDP PSAFNNGGSA ALQSSSQSSV  300
ATWSSPRGLN ENAPFVPIMF SATQGVTSQN PEWNGYQAPI YSPERSIHLA PAYVISNPAT  360
DNNVYAHQQH TLVDEFPERP GQPECNYYMK TGDCKFKSNC KYHHPKNQIP KSSPCALSDK  420
GLPLRPGQHV CSYYSRYGIC KFGPACKFDH PTQPALMTGY AEDQTRTSET GNESDTAI
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.11e-133C3H family protein