PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021637883.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 204aa MW: 23664.6 Da PI: 10.4212 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 38 | 2.1e-12 | 35 | 73 | 7 | 45 |
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 rq +s+R+ g l KA EL +LCd++ ++++fs+ gk XP_021637883.1 35 KERQLKYSRRKVGTLNKARELATLCDVDLLLLMFSPAGK 73 67999*******************************998 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 204 aa Download sequence |
MVQIRGNAEE LQLLLQESEK MGRKKLRILR LECAKERQLK YSRRKVGTLN KARELATLCD 60 VDLLLLMFSP AGKPSLYIGH DKDLSTVLER LANLTIEERE QRRIYTMKKE YSKANTTVDT 120 GNILLDTHRA EAVKFGSSQL QRHQLGELKQ KLTEKMNILR DWKNPFNVDN LAQIKIMEER 180 LIATLHSIKN RKKVAEHLQS QTVS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G18750.1 | 1e-15 | M-type_MADS family protein |