PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021636638.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 2136aa MW: 233794 Da PI: 8.4781

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021636638.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.6e-06	2011	2032	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++ +tG C+ G++Ck +H++ XP_021636638.1 2011 CPTYEATGSCPQGSKCKLHHPK 2032 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2136 aa Download sequence
MDPRSPYLHH TRYVPRHPQP PPPPPQSHPH PDHPFPNNPN IYASHHSTLI AAPPPPPLRP 60 QPRPPPTPSY HSLPTPPQFN PHDSQFSYNP NTFNSNHPRS HADVHNFTQS PPLMHHKPFD 120 DDLPRRLPNY IRDSRPDLRD PPRVLPDRWP SRPYPPANVD SDSYRRPLDN QPMSPMKIRR 180 ELEGNSRFIE EHKQREELRL GRGDDNYHRR SQFGSTSDRS SRDFRMVSNQ MNQSSPCENL 240 RGLPYDNRMN ENQRWVHGRE VNGDAHYSFI ERGSNEIGDP SEIRVATGKR EHYRCREVNA 300 QLERHSSKGS REDSYEFSRT SRKPLQKKSV LLRIQKPNYR NREDERVHYL GYLDDNKSSS 360 FRGKDQNLYQ NHEMGEQVRE GSPVELDVSF KSNSLVAKAI ATPSSTGVSD LHLTPKNEKV 420 RKVVGLNKDS SSSSAIKPNE GIVKLENAVL VANNASSSDM DLLQSKVEVT ASVTGNVQVS 480 GSLPGSSGTK TSPGNSKVES STKVSVSNKG GTNVISGKTS SLKVAKKKKI VKRVVKKVIN 540 PLSSSSSQPT TKCDGSVTAY GVAHGLPASS EPEKSSALAS VDIVDSQPHL NETNVVPETE 600 NDRVEGFAKV LESDNDTITD SSGLRFPNIK RKRSHSTSPL GSSSHEESKI NGNLANGNSA 660 NYLHGMSSTD KDFSKLLNEN TSSDMDSVEP ASKQLCLDGG SFLLENNTAS LSPKVLGMET 720 NSAEGNTDFG FLSSEEIKIQ EGPASSYNIT LGCDSDSGLI SDGITVSNIG TTDVSCKEPC 780 TNQGKPLAEN GVVDQCLNAN FSVGSGKIFC ESNSGERTIQ NVDTCASCSN EVRTIYSSNS 840 GHIISGEIDF SSNGTIDDVC GRPSSDKVST LENVPTGGSL NCTISTDGSK EDTPNIKKSN 900 KNVEMPQLHV SKSEVNNSYL KPVNMVNSAT WVDTTLRLSF KDPTPTEFTV SGDVCGNVGL 960 RGCTDGISDF CLRSSPDALE ANASGNSTVN VGPSGTSKQN QKKRKFSGSQ LESTCLIASG 1020 ESEGPLTAGI SVSAVEVPCN SGNGLMQPEP EMTVSAMNPL FTSDFPPLKK QITEPLDNCS 1080 VGGYHGTEDS LIDGFEDSGL RGVHSCSTVW ELAVQKVQSP CPSGSEGKQI AEATLVMAGS 1140 SHQNNSILIE SGEAEKMEVD TGEEQDIADS GTAQCQFPSE LQVPDSDERL PGTDVENDSC 1200 QHIKNDLPSM SSYLSSLGDG KEVSATNSSG AVMGLVSDTL PDMLSTSHIQ LSIEKGGGDD 1260 EILLGKRAIK GGSNISVVTS GSPNTEINFN SDHGVENDHS FSGKTGLLPS QDSINSTQMG 1320 NTMSGEVYGR KNQPNQAVSR IYPGRSSVVF ASSKNTASST HISKPRTWHR ADNSSTFGQP 1380 GNKAFSSTVP TQRKLHKQIT KFENTSYIRK GNSLVRKPTT MAAQSQSSHG LSSSVYRLNS 1440 SGTDEVKKNA GSDIRTGVVD PSNFVRTGAN AAFERPRTPP LASATKLPNH ASSFLGNFTS 1500 SPLAEPLHNC ATETASDHMT STASNDVLNS SENAIIISEN PMTQTGQINN LDCHNELNDG 1560 NALSSNANSV TYVKRKSNQL VATSNPSSLS VYNAHNAPAL PSDGYYKRRK NQLVRTSLES 1620 HVQPAFIMPE ESVNPEGQAP HNITSSRSSS KRRSRKAVTK THKPLKFALV WTQRSAQLLN 1680 DDDDSLHRHK FLPHLFPWKR ATYWRSFITN SAANPSNNSS SAISRKLLLS RKRDTVYTRS 1740 KHGFSLRKSK VLSVGGSSLK WSKSIERRSK KASEEATLAV AEAERKKREQ SGASCVVSGT 1800 MNRNSSSRER IFQIGSFRYK MDSSRRTLQR ISDDDSSYSA AFQTEKDFKR SYVPRRLVIG 1860 KDEYVRIGNG NQLVRDPKKR TRILASEKVR WSLHTARSRL ARKRKYCQFF TRFGKCNKDD 1920 GKCPYIHDSS KIAVCTKFLN GLCFNSDCKL THKVIPERMP DCSYYLQGLC TNKNCPYRHV 1980 HVNPNAFTCE GFLRGYCADG NECRKKHSYV CPTYEATGSC PQGSKCKLHH PKNRSKGKKS 2040 KQSREKKIDQ GRYFGSTHIN VSEPGTAVSE THSAQDNSKI CFEGSIADYM ILDVADAVRE 2100 NINLADEQTS FSEGDPLDLK LVDPDELIKP IRIMTT

Sequence ? help Back to Top

Protein Sequence Length: 2136 aa Download sequence

MDPRSPYLHH TRYVPRHPQP PPPPPQSHPH PDHPFPNNPN IYASHHSTLI AAPPPPPLRP  60
QPRPPPTPSY HSLPTPPQFN PHDSQFSYNP NTFNSNHPRS HADVHNFTQS PPLMHHKPFD  120
DDLPRRLPNY IRDSRPDLRD PPRVLPDRWP SRPYPPANVD SDSYRRPLDN QPMSPMKIRR  180
ELEGNSRFIE EHKQREELRL GRGDDNYHRR SQFGSTSDRS SRDFRMVSNQ MNQSSPCENL  240
RGLPYDNRMN ENQRWVHGRE VNGDAHYSFI ERGSNEIGDP SEIRVATGKR EHYRCREVNA  300
QLERHSSKGS REDSYEFSRT SRKPLQKKSV LLRIQKPNYR NREDERVHYL GYLDDNKSSS  360
FRGKDQNLYQ NHEMGEQVRE GSPVELDVSF KSNSLVAKAI ATPSSTGVSD LHLTPKNEKV  420
RKVVGLNKDS SSSSAIKPNE GIVKLENAVL VANNASSSDM DLLQSKVEVT ASVTGNVQVS  480
GSLPGSSGTK TSPGNSKVES STKVSVSNKG GTNVISGKTS SLKVAKKKKI VKRVVKKVIN  540
PLSSSSSQPT TKCDGSVTAY GVAHGLPASS EPEKSSALAS VDIVDSQPHL NETNVVPETE  600
NDRVEGFAKV LESDNDTITD SSGLRFPNIK RKRSHSTSPL GSSSHEESKI NGNLANGNSA  660
NYLHGMSSTD KDFSKLLNEN TSSDMDSVEP ASKQLCLDGG SFLLENNTAS LSPKVLGMET  720
NSAEGNTDFG FLSSEEIKIQ EGPASSYNIT LGCDSDSGLI SDGITVSNIG TTDVSCKEPC  780
TNQGKPLAEN GVVDQCLNAN FSVGSGKIFC ESNSGERTIQ NVDTCASCSN EVRTIYSSNS  840
GHIISGEIDF SSNGTIDDVC GRPSSDKVST LENVPTGGSL NCTISTDGSK EDTPNIKKSN  900
KNVEMPQLHV SKSEVNNSYL KPVNMVNSAT WVDTTLRLSF KDPTPTEFTV SGDVCGNVGL  960
RGCTDGISDF CLRSSPDALE ANASGNSTVN VGPSGTSKQN QKKRKFSGSQ LESTCLIASG  1020
ESEGPLTAGI SVSAVEVPCN SGNGLMQPEP EMTVSAMNPL FTSDFPPLKK QITEPLDNCS  1080
VGGYHGTEDS LIDGFEDSGL RGVHSCSTVW ELAVQKVQSP CPSGSEGKQI AEATLVMAGS  1140
SHQNNSILIE SGEAEKMEVD TGEEQDIADS GTAQCQFPSE LQVPDSDERL PGTDVENDSC  1200
QHIKNDLPSM SSYLSSLGDG KEVSATNSSG AVMGLVSDTL PDMLSTSHIQ LSIEKGGGDD  1260
EILLGKRAIK GGSNISVVTS GSPNTEINFN SDHGVENDHS FSGKTGLLPS QDSINSTQMG  1320
NTMSGEVYGR KNQPNQAVSR IYPGRSSVVF ASSKNTASST HISKPRTWHR ADNSSTFGQP  1380
GNKAFSSTVP TQRKLHKQIT KFENTSYIRK GNSLVRKPTT MAAQSQSSHG LSSSVYRLNS  1440
SGTDEVKKNA GSDIRTGVVD PSNFVRTGAN AAFERPRTPP LASATKLPNH ASSFLGNFTS  1500
SPLAEPLHNC ATETASDHMT STASNDVLNS SENAIIISEN PMTQTGQINN LDCHNELNDG  1560
NALSSNANSV TYVKRKSNQL VATSNPSSLS VYNAHNAPAL PSDGYYKRRK NQLVRTSLES  1620
HVQPAFIMPE ESVNPEGQAP HNITSSRSSS KRRSRKAVTK THKPLKFALV WTQRSAQLLN  1680
DDDDSLHRHK FLPHLFPWKR ATYWRSFITN SAANPSNNSS SAISRKLLLS RKRDTVYTRS  1740
KHGFSLRKSK VLSVGGSSLK WSKSIERRSK KASEEATLAV AEAERKKREQ SGASCVVSGT  1800
MNRNSSSRER IFQIGSFRYK MDSSRRTLQR ISDDDSSYSA AFQTEKDFKR SYVPRRLVIG  1860
KDEYVRIGNG NQLVRDPKKR TRILASEKVR WSLHTARSRL ARKRKYCQFF TRFGKCNKDD  1920
GKCPYIHDSS KIAVCTKFLN GLCFNSDCKL THKVIPERMP DCSYYLQGLC TNKNCPYRHV  1980
HVNPNAFTCE GFLRGYCADG NECRKKHSYV CPTYEATGSC PQGSKCKLHH PKNRSKGKKS  2040
KQSREKKIDQ GRYFGSTHIN VSEPGTAVSE THSAQDNSKI CFEGSIADYM ILDVADAVRE  2100
NINLADEQTS FSEGDPLDLK LVDPDELIKP IRIMTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	630	635	KRKRSH