PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021636637.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 2146aa MW: 234828 Da PI: 8.5112

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021636637.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	17.3	8.7e-06	2021	2042	6	27
-SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHgp 27 C+++ +tG C+ G++Ck +H++ XP_021636637.1 2021 CPTYEATGSCPQGSKCKLHHPK 2042 *****************99985 PP

Sequence ? help Back to Top
Protein Sequence Length: 2146 aa Download sequence
MDPRSPYLHH TRYVPRHPQP PPPPPQSHPH PDHPFPNNPN IYASHHSTLI AAPPPPPLRP 60 QPRPPPTPSY HSLPTPPQFN PHDSQFSYNP NTFNSNHPRS HADVHNFTQS PPLMHHKPFD 120 DDLPRRLPNY IRDSRPDLRD PPRVLPDRWP SRPYPPANVD SDSYRRPLDN QPMSPMKIRR 180 ELEGNSRFIE EHKQREELRL GRGDDNYHRR SQFGSTSDRS SRDFRMVSNQ MNQSSPCENL 240 RGLPYDNRMN ENQRWVHGRE VNGDAHYSFI ERGSNEIGDP SEIRVATGKR EHYRCREVNA 300 QLERHSSKGS REDSYEFSRT SRKPLQKKSV LLRIQKPNYR NREDERVHYL GYLDDNKSSS 360 FRGKDQNLYQ NHEMGEQVRE GSPVELDVSF KSNSLVAKAI ATPSSTGVSD LHLTPKNEKV 420 RKVVGLNKDS SSSSAIKPNE GIVKLENAVL VANNASSSDM DLLQSKVEVT ASVTGNVQVS 480 GSLPGSSGTK TSPGNSKVES STKVSVSNKG GTNVISGKTS SLKVAKKKKI VKRVVKKVIN 540 PLSSSSSQPT TKCDGSVTAY GVAHGLPASS EPEKSSALAS VDIVDSQPHL NETNVVPETE 600 NDRVEGFAKV LESDNDTITD SSGLRFPNIK RKRSHSTSPL GSSSHEESKI NGNLANGNSA 660 NYLHGMSSTD KDFSKLLNEN TSSDMDSVEP ASKQLCLDGG SFLLENNTAS LSPKVLGMET 720 NSAEGNTDFG FLSSEEIKIQ EGPASSYNIT LGCDSDSGLI SDGITVSNIG TTDVSCKEPC 780 TNQGKPLAEN GVVDQCLNAN FSVGSGKIFC ESNSGERTIQ NVDTCASCSN EVRTIYSSNS 840 GHIISGEIDF SSNGTIDDVC GRPSSDKVST LENVPTGGSL NCTISTDGSK EDTPNIKKSN 900 KNVEMPQLHV SKSEVNNSYL KPVNMVNSAT WVDTTLRLSF KDPTPTEFTV SGDVCGNVGL 960 RGCTDGISDF CLRSSPDALE ANASGNSTVN VGPSGTSKQN QKKRKFSGSQ LESTCLIASG 1020 ESEGPLTAGI SVSAVEVPCN SGNGLMQPEP EMTVSAMNPL FTSDFPPLKK QITEPLDNCS 1080 VGGYHGTEDS LIDGFEDSGL RGVHSCSTVW ELAVQKVQSP CPSGSEGKQI AEATLVMAGS 1140 SHQNNSILIE SGEAEKMEVD TGEEQDIADS GTAQCQFPSE LQVPDSDERL PGTDVENDSC 1200 QHIKNDLPSM SSYLSSLGDG KEVSATNSSG AVMGLVSDTL PDMLSTSHIQ LSIEKGGGDD 1260 EILLGKRAIK GGSNISVVTS GSPNTEINFN SDHGVENDHS FSGKTGLLPS QDSINSTQMG 1320 NTMSGEVYGR KNQPNQAVSR IYPGRSSVVF ASSKNTASST HISKPRTWHR ADNSSTFGQP 1380 GNKAFSSTVP TQRKLHKQIT KFENTSYIRK GNSLVRKPTT MAAQSQSSHG LSSSVYRLNS 1440 SGTDEVKKNA GSDIRTGVVD PSNFVRTGAN AAFERPRTPP LASATKLPNH ASSFLGNFTS 1500 SPLAEPLHNC ATETASDHMT STASNDVLNS SENAIIISEN PMTQTGQINN LDCHNELNDG 1560 NALSSNANSV TYVKRKSNQL VATSNPSSLS VYNAHNAPAL PSDGYYKRRK NQLVRTSLES 1620 HVQPAFIMPE ESVNPEGQAP HNITSSRSSS KRRSRKAVTK THKPLKFALV WTQRSAQLLN 1680 DDDDSLHRHK FLPHLFPWKR ATYWRSFITN SAANPSNNSS SAIRKLLLSR KRDTVYTRSK 1740 HGFSLRKSKV LSVGGSSLKW SKSIERRSKK ASEEATLAVA EAERKKREQS GASCVVSGTM 1800 NRNSSSRKSV PSINLHSGER IFQIGSFRYK MDSSRRTLQR ISDDDSSYSA AFQTEKDFKR 1860 SYVPRRLVIG KDEYVRIGNG NQLVRDPKKR TRILASEKVR WSLHTARSRL ARKRKYCQFF 1920 TRFGKCNKDD GKCPYIHDSS KIAVCTKFLN GLCFNSDCKL THKVIPERMP DCSYYLQGLC 1980 TNKNCPYRHV HVNPNAFTCE GFLRGYCADG NECRKKHSYV CPTYEATGSC PQGSKCKLHH 2040 PKNRSKGKKS KQSREKKIDQ GRYFGSTHIN VSEPGTAVSE THSAQDNSKI CFEGSIADYM 2100 ILDVADAVRE NINLADEQTS FSEGDPLDLK LVDPDELIKP IRIMTT

Sequence ? help Back to Top

Protein Sequence Length: 2146 aa Download sequence

MDPRSPYLHH TRYVPRHPQP PPPPPQSHPH PDHPFPNNPN IYASHHSTLI AAPPPPPLRP  60
QPRPPPTPSY HSLPTPPQFN PHDSQFSYNP NTFNSNHPRS HADVHNFTQS PPLMHHKPFD  120
DDLPRRLPNY IRDSRPDLRD PPRVLPDRWP SRPYPPANVD SDSYRRPLDN QPMSPMKIRR  180
ELEGNSRFIE EHKQREELRL GRGDDNYHRR SQFGSTSDRS SRDFRMVSNQ MNQSSPCENL  240
RGLPYDNRMN ENQRWVHGRE VNGDAHYSFI ERGSNEIGDP SEIRVATGKR EHYRCREVNA  300
QLERHSSKGS REDSYEFSRT SRKPLQKKSV LLRIQKPNYR NREDERVHYL GYLDDNKSSS  360
FRGKDQNLYQ NHEMGEQVRE GSPVELDVSF KSNSLVAKAI ATPSSTGVSD LHLTPKNEKV  420
RKVVGLNKDS SSSSAIKPNE GIVKLENAVL VANNASSSDM DLLQSKVEVT ASVTGNVQVS  480
GSLPGSSGTK TSPGNSKVES STKVSVSNKG GTNVISGKTS SLKVAKKKKI VKRVVKKVIN  540
PLSSSSSQPT TKCDGSVTAY GVAHGLPASS EPEKSSALAS VDIVDSQPHL NETNVVPETE  600
NDRVEGFAKV LESDNDTITD SSGLRFPNIK RKRSHSTSPL GSSSHEESKI NGNLANGNSA  660
NYLHGMSSTD KDFSKLLNEN TSSDMDSVEP ASKQLCLDGG SFLLENNTAS LSPKVLGMET  720
NSAEGNTDFG FLSSEEIKIQ EGPASSYNIT LGCDSDSGLI SDGITVSNIG TTDVSCKEPC  780
TNQGKPLAEN GVVDQCLNAN FSVGSGKIFC ESNSGERTIQ NVDTCASCSN EVRTIYSSNS  840
GHIISGEIDF SSNGTIDDVC GRPSSDKVST LENVPTGGSL NCTISTDGSK EDTPNIKKSN  900
KNVEMPQLHV SKSEVNNSYL KPVNMVNSAT WVDTTLRLSF KDPTPTEFTV SGDVCGNVGL  960
RGCTDGISDF CLRSSPDALE ANASGNSTVN VGPSGTSKQN QKKRKFSGSQ LESTCLIASG  1020
ESEGPLTAGI SVSAVEVPCN SGNGLMQPEP EMTVSAMNPL FTSDFPPLKK QITEPLDNCS  1080
VGGYHGTEDS LIDGFEDSGL RGVHSCSTVW ELAVQKVQSP CPSGSEGKQI AEATLVMAGS  1140
SHQNNSILIE SGEAEKMEVD TGEEQDIADS GTAQCQFPSE LQVPDSDERL PGTDVENDSC  1200
QHIKNDLPSM SSYLSSLGDG KEVSATNSSG AVMGLVSDTL PDMLSTSHIQ LSIEKGGGDD  1260
EILLGKRAIK GGSNISVVTS GSPNTEINFN SDHGVENDHS FSGKTGLLPS QDSINSTQMG  1320
NTMSGEVYGR KNQPNQAVSR IYPGRSSVVF ASSKNTASST HISKPRTWHR ADNSSTFGQP  1380
GNKAFSSTVP TQRKLHKQIT KFENTSYIRK GNSLVRKPTT MAAQSQSSHG LSSSVYRLNS  1440
SGTDEVKKNA GSDIRTGVVD PSNFVRTGAN AAFERPRTPP LASATKLPNH ASSFLGNFTS  1500
SPLAEPLHNC ATETASDHMT STASNDVLNS SENAIIISEN PMTQTGQINN LDCHNELNDG  1560
NALSSNANSV TYVKRKSNQL VATSNPSSLS VYNAHNAPAL PSDGYYKRRK NQLVRTSLES  1620
HVQPAFIMPE ESVNPEGQAP HNITSSRSSS KRRSRKAVTK THKPLKFALV WTQRSAQLLN  1680
DDDDSLHRHK FLPHLFPWKR ATYWRSFITN SAANPSNNSS SAIRKLLLSR KRDTVYTRSK  1740
HGFSLRKSKV LSVGGSSLKW SKSIERRSKK ASEEATLAVA EAERKKREQS GASCVVSGTM  1800
NRNSSSRKSV PSINLHSGER IFQIGSFRYK MDSSRRTLQR ISDDDSSYSA AFQTEKDFKR  1860
SYVPRRLVIG KDEYVRIGNG NQLVRDPKKR TRILASEKVR WSLHTARSRL ARKRKYCQFF  1920
TRFGKCNKDD GKCPYIHDSS KIAVCTKFLN GLCFNSDCKL THKVIPERMP DCSYYLQGLC  1980
TNKNCPYRHV HVNPNAFTCE GFLRGYCADG NECRKKHSYV CPTYEATGSC PQGSKCKLHH  2040
PKNRSKGKKS KQSREKKIDQ GRYFGSTHIN VSEPGTAVSE THSAQDNSKI CFEGSIADYM  2100
ILDVADAVRE NINLADEQTS FSEGDPLDLK LVDPDELIKP IRIMTT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	630	635	KRKRSH