PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | XP_021635113.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 455aa MW: 48987.6 Da PI: 8.1656 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 34.6 | 3.2e-11 | 55 | 81 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +++rtG C yG++C+F+H+p XP_021635113.1 55 PGQPDCVYYLRTGLCGYGSNCRFNHPP 81 5789*********************97 PP | |||||||
2 | zf-CCCH | 36.4 | 8.6e-12 | 98 | 122 | 3 | 27 |
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C ++++tGtCkyG++Ck++H++ XP_021635113.1 98 QPDCGYYLKTGTCKYGSTCKYHHPR 122 789********************96 PP | |||||||
3 | zf-CCCH | 38.3 | 2.3e-12 | 144 | 167 | 4 | 27 |
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C++++rtG Ck+G CkF+H++ XP_021635113.1 144 KSCPYYMRTGSCKFGVACKFHHPQ 167 66********************97 PP | |||||||
4 | zf-CCCH | 39.5 | 9.1e-13 | 292 | 317 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++Cr+f+ tGtCkyG+ Ck++H++ XP_021635113.1 292 DQPECRYFMNTGTCKYGSDCKYHHPK 317 689*********************96 PP | |||||||
5 | zf-CCCH | 32.1 | 1.9e-10 | 339 | 362 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 ++ C++++ +G Ck+G++C+F H+ XP_021635113.1 339 QPVCSNYSMYGLCKFGPTCRFDHP 362 689********************8 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 455 aa Download sequence |
MPDNSNNNNK NRQVKSNALP NQSPDNIEDA IWRLKIHDNQ EQGGMAPSSA YPDRPGQPDC 60 VYYLRTGLCG YGSNCRFNHP PAAQGTQFIE ELPERVGQPD CGYYLKTGTC KYGSTCKYHH 120 PRDRNGAGPV SFNILGLPMR QDEKSCPYYM RTGSCKFGVA CKFHHPQPVP LGAGLPLTGP 180 AGSGPMGSSI VPSSGLPYVG GLPTWSLPRA PYASGPHLQG PQAYMPVVLS PSQGVVSAQG 240 WNTYVGNLSP LSSASVLGSS LVYNSRDQGE SGSSGQIHLL STTTSHLPER PDQPECRYFM 300 NTGTCKYGSD CKYHHPKERI AQLATNSVGP PGLPSRPAQP VCSNYSMYGL CKFGPTCRFD 360 HPSPGYPYSY SLNLQPVSIF DSSLLTHPRM SAPALSAESP VSLSSKFPGW VRNPDGASNK 420 RQNSNANTKI ADDQPEQASS PPPHSSQASS EPSHD |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G04990.2 | 1e-116 | C3H family protein |