PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | XP_021635064.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea
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Family | C3H | ||||||||
Protein Properties | Length: 856aa MW: 95185.4 Da PI: 4.8506 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 24.6 | 4.3e-08 | 285 | 304 | 5 | 25 |
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C +G++C+F H XP_021635064.1 285 ICDFFSK-GWCIRGSSCTFLH 304 8******.************* PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 856 aa Download sequence |
MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII 60 VVEEEEIEEE VEVEEDDMSD SSKEANAKSN DVSQDTEFEG TDRQLGLRST PGRSSLGLPS 120 NSLVEDGVCN SQFSGPLNEP VKLQEELHVN YEDSKKSGTN GENGSQRSLV KNDTEALMIK 180 KKSKEISKHY SDSMAHFFND EAMAAETTSP SSITVNEVTN ALAIKDSLGM ETNGILDSEV 240 DVNPMEKRSE DKEQTTSRLV TLEKRTRSLS PSAEFEDQNK RPAVICDFFS KGWCIRGSSC 300 TFLHIKNKTV NAKEQLEGDA AAANFSKRDQ FDEGLKNITE KQKFPGFPDL MAPSIGNSAA 360 FSCQFSSERI LALENGESQR LHQLDDKHKS LSLQREDLSQ GFHSDTQQFP SSKDDHGVSS 420 SLKNVGIDNL RRSWPASDYG SYASPINRGS SPSFQSRLLP ELRYSSSFSS VTSSNNHREN 480 SFSYLSSLDN LTYIRDQFVQ GTSLDGSLSS SVMLPSQQIS AWKGPLFSFS SSLNTSPFGS 540 QKLSDNDRNY HASRSLRQSA SLLFGSERET SLLTSVSRGP LHYAEHKAKI SSNDWEPSIP 600 FRPSFSITYT VASSPGSQYD PLRDSIDLST TGYRLPFKFS FVSQERSNLN SSHQPIYDNS 660 LSKTLGSECH NDKSTVSLHG RFHENVLDKN CYTPGKVMGG TCVVSGQKGT MPKEENASSS 720 GHLSDVPNTS KIDVDCDSRH EYDAPRHKQD FKVDRVRQKN EMDVDQKTDG ESRVLRHFRA 780 ALIDFVKELL RPTWREGHLS KDAHNTIAKK AVEKVLRTLQ PHQIPTTVES TRQYLSSSQP 840 KIAKLVEGYC TKYGKS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33835.1 | 3e-40 | C3H family protein |