PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021635062.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 857aa MW: 95373.6 Da PI: 4.9059

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021635062.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	24.6	4.3e-08	286	305	5	25
--SGGGGTS--TTTTT-SS-S CS zf-CCCH 5 lCrffartGtCkyGdrCkFaH 25 +C+ff++ G+C +G++C+F H XP_021635062.1 286 ICDFFSK-GWCIRGSSCTFLH 305 8****.*********** PP

Sequence ? help Back to Top
Protein Sequence Length: 857 aa Download sequence
MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII 60 VVEEEEIEEE VEVEEDDMSD SSKEANAKNV SQDTEFEGTD RQLGLRSTPG RSSLGLPSNS 120 LVEDGVCNSQ FSGPLNEPVK LQEELHVNYE DSKKSGTNGE NGSQRSLVKN DTEALMIKKK 180 SKEISKHYSD SMAHFFNDEA MAAETTSPSS ITVNEVTNAL AIKDSLGMET NGILDSEVDV 240 NPMEKRSEDK EQTTSRFSRL VTLEKRTRSL SPSAEFEDQN KRPAVICDFF SKGWCIRGSS 300 CTFLHIKNKT VNAKEQLEGD AAAANFSKRD QFDEGLKNIT EKQKFPGFPD LMAPSIGNSA 360 AFSCQFSSER ILALENGESQ RLHQLDDKHK SLSLQREDLS QGFHSDTQQF PSSKDDHGVS 420 SSLKNVGIDN LRRSWPASDY GSYASPINRG SSPSFQSRLL PELRYSSSFS SVTSSNNHRE 480 NSFSYLSSLD NLTYIRDQFV QGTSLDGSLS SSVMLPSQQI SAWKGPLFSF SSSLNTSPFG 540 SQKLSDNDRN YHASRSLRQS ASLLFGSERE TSLLTSVSRG PLHYAEHKAK ISSNDWEPSI 600 PFRPSFSITY TVASSPGSQY DPLRDSIDLS TTGYRLPFKF SFVSQERSNL NSSHQPIYDN 660 SLSKTLGSEC HNDKSTVSLH GRFHENVLDK NCYTPGKVMG GTCVVSGQKG TMPKEENASS 720 SGHLSDVPNT SKIDVDCDSR HEYDAPRHKQ DFKVDRVRQK NEMDVDQKTD GESRVLRHFR 780 AALIDFVKEL LRPTWREGHL SKDAHNTIAK KAVEKVLRTL QPHQIPTTVE STRQYLSSSQ 840 PKIAKLVEGY CTKYGKS

Sequence ? help Back to Top

Protein Sequence Length: 857 aa Download sequence

MPPPISAAQG SDDDQSPSSS GPPVEISDSD LEKDDQETEI EVEEEEIEND NEEEEYEEII  60
VVEEEEIEEE VEVEEDDMSD SSKEANAKNV SQDTEFEGTD RQLGLRSTPG RSSLGLPSNS  120
LVEDGVCNSQ FSGPLNEPVK LQEELHVNYE DSKKSGTNGE NGSQRSLVKN DTEALMIKKK  180
SKEISKHYSD SMAHFFNDEA MAAETTSPSS ITVNEVTNAL AIKDSLGMET NGILDSEVDV  240
NPMEKRSEDK EQTTSRFSRL VTLEKRTRSL SPSAEFEDQN KRPAVICDFF SKGWCIRGSS  300
CTFLHIKNKT VNAKEQLEGD AAAANFSKRD QFDEGLKNIT EKQKFPGFPD LMAPSIGNSA  360
AFSCQFSSER ILALENGESQ RLHQLDDKHK SLSLQREDLS QGFHSDTQQF PSSKDDHGVS  420
SSLKNVGIDN LRRSWPASDY GSYASPINRG SSPSFQSRLL PELRYSSSFS SVTSSNNHRE  480
NSFSYLSSLD NLTYIRDQFV QGTSLDGSLS SSVMLPSQQI SAWKGPLFSF SSSLNTSPFG  540
SQKLSDNDRN YHASRSLRQS ASLLFGSERE TSLLTSVSRG PLHYAEHKAK ISSNDWEPSI  600
PFRPSFSITY TVASSPGSQY DPLRDSIDLS TTGYRLPFKF SFVSQERSNL NSSHQPIYDN  660
SLSKTLGSEC HNDKSTVSLH GRFHENVLDK NCYTPGKVMG GTCVVSGQKG TMPKEENASS  720
SGHLSDVPNT SKIDVDCDSR HEYDAPRHKQ DFKVDRVRQK NEMDVDQKTD GESRVLRHFR  780
AALIDFVKEL LRPTWREGHL SKDAHNTIAK KAVEKVLRTL QPHQIPTTVE STRQYLSSSQ  840
PKIAKLVEGY CTKYGKS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33835.1	3e-40	C3H family protein