PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

XP_021634959.1

Organism

Hevea brasiliensis

Taxonomic ID

3981

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Euphorbiaceae; Crotonoideae; Micrandreae; Hevea

Family

C3H

Protein Properties

Length: 482aa MW: 50875.9 Da PI: 8.1514

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
XP_021634959.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	38.2	2.4e-12	49	74	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 +++ C +++rtG+C yG+rC+F+H++ XP_021634959.1 49 DEADCIYYLRTGFCGYGARCRFNHPR 74 6799********************96 PP
2	zf-CCCH	39.5	9.5e-13	96	120	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++++rtGtCk+G++Ck++H++ XP_021634959.1 96 QPVCQYYMRTGTCKFGASCKYHHPK 120 689********************96 PP
3	zf-CCCH	35.1	2.2e-11	141	166	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++ +tG+Ck+G++CkF+H++ XP_021634959.1 141 GEKECTYYVKTGQCKFGATCKFHHPQ 166 7899********************97 PP
4	zf-CCCH	38.7	1.7e-12	306	332	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+++++tG Ck+G++C+++H+p XP_021634959.1 306 PGQPECQYYMKTGDCKFGSSCRYHHPP 332 5789*********************97 PP
5	zf-CCCH	25.4	2.5e-08	354	378	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++C ++ + G+Ck+G+ CkF H++ XP_021634959.1 354 APICAHYTQWGQCKFGPACKFDHPM 378 589********************95 PP

Sequence ? help Back to Top
Protein Sequence Length: 482 aa Download sequence
MDRYGWTQEG SQSDPSKEWT APGPETELEE GVWRLGLGEG ESGYPERPDE ADCIYYLRTG 60 FCGYGARCRF NHPRDRGAVI GPARAGAGEF PERVGQPVCQ YYMRTGTCKF GASCKYHHPK 120 QGGVSVSPVS LNYSGYPIRP GEKECTYYVK TGQCKFGATC KFHHPQPASL QIPAQSLAPQ 180 VTPMPASVTA SALYPTVQSP SVPSTQQYGL VVARPPLLPG SYVQGPYGPM LLSPGLVSYP 240 SWSPYPAPVS PVASPSTQPG VGSGSVYGIT QLSPSAPAYT GAYQPMPTSI GPSSSSQKEH 300 SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VVLSPIRLPL RPGAPICAHY 360 TQWGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYPV GSSIGTLAPS SSSSELRPEL 420 ISGSSKDSSS TRMSSSSSTS SGLVGSTFSK SGPAPLSGVQ QSSQSSGTST GSSSSTEAHT 480 SI

Sequence ? help Back to Top

Protein Sequence Length: 482 aa Download sequence

MDRYGWTQEG SQSDPSKEWT APGPETELEE GVWRLGLGEG ESGYPERPDE ADCIYYLRTG  60
FCGYGARCRF NHPRDRGAVI GPARAGAGEF PERVGQPVCQ YYMRTGTCKF GASCKYHHPK  120
QGGVSVSPVS LNYSGYPIRP GEKECTYYVK TGQCKFGATC KFHHPQPASL QIPAQSLAPQ  180
VTPMPASVTA SALYPTVQSP SVPSTQQYGL VVARPPLLPG SYVQGPYGPM LLSPGLVSYP  240
SWSPYPAPVS PVASPSTQPG VGSGSVYGIT QLSPSAPAYT GAYQPMPTSI GPSSSSQKEH  300
SFPERPGQPE CQYYMKTGDC KFGSSCRYHH PPELIAPKTT VVLSPIRLPL RPGAPICAHY  360
TQWGQCKFGP ACKFDHPMGT LSYSPSASSL ADMPVAPYPV GSSIGTLAPS SSSSELRPEL  420
ISGSSKDSSS TRMSSSSSTS SGLVGSTFSK SGPAPLSGVQ QSSQSSGTST GSSSSTEAHT  480
SI

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-154	C3H family protein