PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW35104.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 786aa MW: 84893.2 Da PI: 8.3035

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW35104.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	23.7	8.4e-08	380	400	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 +C+ f++ G C+ Gd C +aHg RWW35104.1 380 PCPEFRK-GSCRNGDACEYAHG 400 8****.***********9 PP

Sequence ? help Back to Top
Protein Sequence Length: 786 aa Download sequence
MSVGFCTLWT TRPFVWEGAS GTHSVGRRLY GFVIVSPLRK GDERGASPYF DRSLLVVRLR 60 QRLQSRLTTW RTSLCRDGKV RTWMNATWKY STSVREIHCE KSRYPVTEDR LKPRLGTPIL 120 KPPWAERSCC PCSLPDMSGG VTETQTEAPA AAELLLELAA SDDLPAFRRA VEDDGHALDA 180 AAPWYCRRSG GRGMGLLQRT PLMVAALHGS TAVLEYVLAA CPSEALRCSS SDAATALHCA 240 ASGGAASSPT AVELLLAASA DVDALDAAGN RPGDVIARQL PAPVARSLEV TLKAPSLPRV 300 PSPGKGGEAK QGEKKEYPPD STLPDIKNGI YCTDEFRMYT FKVKPCSRAY SHDWTECPFV 360 HPGENARRRD PRKFLYSCVP CPEFRKGSCR NGDACEYAHG VFESWLHPAQ YRTRLCKDEI 420 GCNRRVCFFA HKPEELRTVN PMAASVTGMV APSPGLSSPR LSPLDMATAL LLMQQQQQPG 480 SPMSPSALSS SAAAAAWMSQ HGSATPPPSL QLPSSRLKAS LSARDMEFNL DMLGLGGYQH 540 KLIDNISGSP RANWGNNSLV AAATGTRSSE FTDPLGPLNP SLLTQLQGLS MNPTLPQFQS 600 PTGIHMPQPQ LLSGYGGNLP SSPPTTATPI LGPDHSMAKA IMNSRAASFA NRSQSFCDRG 660 GRQTTLSAAI NAAVATESAL SNWGSPDGKL DWGVRGEELN KLRKSASFDF RYKHNTSGAL 720 STASAALEFD EPDVSWVQSL VKDGPVTLGG RIDMGKQQNE HQTNGEGDFY CPEMFSAGTK 780 QEKLMA

Sequence ? help Back to Top

Protein Sequence Length: 786 aa Download sequence

MSVGFCTLWT TRPFVWEGAS GTHSVGRRLY GFVIVSPLRK GDERGASPYF DRSLLVVRLR  60
QRLQSRLTTW RTSLCRDGKV RTWMNATWKY STSVREIHCE KSRYPVTEDR LKPRLGTPIL  120
KPPWAERSCC PCSLPDMSGG VTETQTEAPA AAELLLELAA SDDLPAFRRA VEDDGHALDA  180
AAPWYCRRSG GRGMGLLQRT PLMVAALHGS TAVLEYVLAA CPSEALRCSS SDAATALHCA  240
ASGGAASSPT AVELLLAASA DVDALDAAGN RPGDVIARQL PAPVARSLEV TLKAPSLPRV  300
PSPGKGGEAK QGEKKEYPPD STLPDIKNGI YCTDEFRMYT FKVKPCSRAY SHDWTECPFV  360
HPGENARRRD PRKFLYSCVP CPEFRKGSCR NGDACEYAHG VFESWLHPAQ YRTRLCKDEI  420
GCNRRVCFFA HKPEELRTVN PMAASVTGMV APSPGLSSPR LSPLDMATAL LLMQQQQQPG  480
SPMSPSALSS SAAAAAWMSQ HGSATPPPSL QLPSSRLKAS LSARDMEFNL DMLGLGGYQH  540
KLIDNISGSP RANWGNNSLV AAATGTRSSE FTDPLGPLNP SLLTQLQGLS MNPTLPQFQS  600
PTGIHMPQPQ LLSGYGGNLP SSPPTTATPI LGPDHSMAKA IMNSRAASFA NRSQSFCDRG  660
GRQTTLSAAI NAAVATESAL SNWGSPDGKL DWGVRGEELN KLRKSASFDF RYKHNTSGAL  720
STASAALEFD EPDVSWVQSL VKDGPVTLGG RIDMGKQQNE HQTNGEGDFY CPEMFSAGTK  780
QEKLMA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G55980.1	6e-89	C3H family protein