PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW34781.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

HB-other

Protein Properties

Length: 474aa MW: 54404.2 Da PI: 10.6093

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW34781.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	21.6	3.7e-07	330	375	13	53
HHHHHHHHHSSS--HHHHHHHHHHCTS-HHH.....HHHHHHHHHH CS Homeobox 13 eeLeelFeknrypsaeereeLAkklgLterq.....VkvWFqNrRa 53 + L +F++n ps++++e L+k+lg++ ++ V+ WF+N R+ RWW34781.1 330 QKLRLAFAENELPSRSAKENLSKQLGISSEKvwyciVSKWFKNARY 375 568889*****************88877722222578***97 PP

Sequence ? help Back to Top
Protein Sequence Length: 474 aa Download sequence
MVSGIAESGR RSKKMKTSRK KLICYTPKKS SLLGKELHSK LDSESAKKSL RKVSYSGRCR 60 LKPNTFMKKR GIRRKFLNGK PVKTMQKISH HTSVNGQCLS RLSTNGSSCM CSKGNPGTSD 120 DNGTIKLHRR RRRKRKKKTV ERDEASCLQR RTRYLLIKIK LEQNLIDAYS GDGWNGQRCI 180 KPEKELLRAQ KQIVKCKIGI RDAIRELDSL SCEMFGKEPP ENEAQSEDED WGPNRRKRRK 240 MEATTGTCMA NPVNEDGTSK LALTAKISCD KKQLFRIPPD AVEVIRLALF NVVGFSYVLW 300 FHVISATDQA LLWSKLHLFH SLTFFYALQQ KLRLAFAENE LPSRSAKENL SKQLGISSEK 360 VWYCIVSKWF KNARYAALRM RKVSKSFRQV SGRRRLVLER TFNNGGTGCQ LDEKTDSEQL 420 YLTEVERLCR LEDKLQSLKK TLLSCMDEDK LTTKTCVREE NVIYVPVAEV KEKA

Sequence ? help Back to Top

Protein Sequence Length: 474 aa Download sequence

MVSGIAESGR RSKKMKTSRK KLICYTPKKS SLLGKELHSK LDSESAKKSL RKVSYSGRCR  60
LKPNTFMKKR GIRRKFLNGK PVKTMQKISH HTSVNGQCLS RLSTNGSSCM CSKGNPGTSD  120
DNGTIKLHRR RRRKRKKKTV ERDEASCLQR RTRYLLIKIK LEQNLIDAYS GDGWNGQRCI  180
KPEKELLRAQ KQIVKCKIGI RDAIRELDSL SCEMFGKEPP ENEAQSEDED WGPNRRKRRK  240
MEATTGTCMA NPVNEDGTSK LALTAKISCD KKQLFRIPPD AVEVIRLALF NVVGFSYVLW  300
FHVISATDQA LLWSKLHLFH SLTFFYALQQ KLRLAFAENE LPSRSAKENL SKQLGISSEK  360
VWYCIVSKWF KNARYAALRM RKVSKSFRQV SGRRRLVLER TFNNGGTGCQ LDEKTDSEQL  420
YLTEVERLCR LEDKLQSLKK TLLSCMDEDK LTTKTCVREE NVIYVPVAEV KEKA

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	129	135	RRRRRKR
2	129	137	RRRRRKRKK
3	130	136	RRRRKRK
4	130	160	RRRRKRKKKTVERDEASCLQRRTRYLLIKIK
5	130	136	RRRRRKR
6	130	138	RRRRRKRKK
7	131	161	RRRRKRKKKTVERDEASCLQRRTRYLLIKIK
8	131	137	RRRRRKR
9	132	162	RRRRKRKKKTVERDEASCLQRRTRYLLIKIK
10	132	138	RRRRRKR
11	133	137	RKRKK
12	133	163	RRRRKRKKKTVERDEASCLQRRTRYLLIKIK
13	134	164	RRRRKRKKKTVERDEASCLQRRTRYLLIKIK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G29940.1	1e-22	HB-PHD family protein