PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW33577.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 198aa MW: 21780.8 Da PI: 6.6106 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 41.7 | 3.4e-13 | 51 | 86 | 1 | 36 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhkl 36 +CaaCk+lrr+Ca+ Cvlapyfp ++p kf +h++ RWW33577.1 51 PCAACKILRRRCADRCVLAPYFPPTEPLKFTTAHRV 86 7**********************************8 PP | |||||||
2 | DUF260 | 52.6 | 1.4e-16 | 86 | 134 | 52 | 100 |
DUF260 52 eeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +r da+ss+vyeA+ar+rdPvyG++g i++lq+q+++l+a+la++++e RWW33577.1 86 VQRADAVSSMVYEANARIRDPVYGCAGAIFQLQKQVSELQAQLARAHAE 134 589******************************************9987 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence |
MKPPSPPPSS PLMDSSDTTT GFHHLSSSPT TSRISSPPPL PPTHPAAIHS PCAACKILRR 60 RCADRCVLAP YFPPTEPLKF TTAHRVQRAD AVSSMVYEAN ARIRDPVYGC AGAIFQLQKQ 120 VSELQAQLAR AHAELINLQA QQKNLIALIC MEMAQTQQDY CTPQSVNALA DSPDLYQNEA 180 YFLDEISHGS AWDEPLWI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07900.1 | 1e-55 | LBD family protein |