PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW33302.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

M-type_MADS

Protein Properties

Length: 525aa MW: 56551 Da PI: 8.8835

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW33302.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	63.3	2.7e-20	206	254	1	49
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 k+ien+ r+++fskRrngi KA+ELS+LC+a+ av+i s+tgkl+ + RWW33302.1 206 KKIENEEARYISFSKRRNGIYGKASELSTLCGADLAVLISSPTGKLHSF 254 68*********************************************99 PP

Sequence ? help Back to Top
Protein Sequence Length: 525 aa Download sequence
MRSSNHASAL VVCALALAMA CTSVTQNTPR DAVDAHNAAR AAVGVGPVSW DDNIASYAQK 60 YADKRVADCQ LVHSGGPYGE NLFWGTGRDF TLTDAVNAWI EEKQYYDYEN NSCADGQVCR 120 HYKQVVWQTT TAIGCARTLC EGGKGIFIVC DYSPPGNLVG QRPYEEKAQD DNILSCSSAR 180 VLLVRCQITM SREKKTSKGK QRIEIKKIEN EEARYISFSK RRNGIYGKAS ELSTLCGADL 240 AVLISSPTGK LHSFGSPSVA LVVDRFLSTG AVPSSGSVHQ EQSRRGQTVQ DLNHRLMDLA 300 RRLEDAKAKK AILRERLEAA AARGQACERI DNLEGLGLDE LDRLMESLGR LKARASARTK 360 EILTGTSPEP TAVDHVGPWR HGGISTVHSD SKGLGGQFPS NPWKDEEGKE RCVQVMQKTS 420 GPRSCLILSI PALLEPISTA KRFDHTTLMI GKAQSRNPVN AILVGGSAGG CGGSAVGRSS 480 GAPVALHRPN VTTAAVESLR GCVNVRYGVG RKGEAAYSIS IARLH

Sequence ? help Back to Top

Protein Sequence Length: 525 aa Download sequence

MRSSNHASAL VVCALALAMA CTSVTQNTPR DAVDAHNAAR AAVGVGPVSW DDNIASYAQK  60
YADKRVADCQ LVHSGGPYGE NLFWGTGRDF TLTDAVNAWI EEKQYYDYEN NSCADGQVCR  120
HYKQVVWQTT TAIGCARTLC EGGKGIFIVC DYSPPGNLVG QRPYEEKAQD DNILSCSSAR  180
VLLVRCQITM SREKKTSKGK QRIEIKKIEN EEARYISFSK RRNGIYGKAS ELSTLCGADL  240
AVLISSPTGK LHSFGSPSVA LVVDRFLSTG AVPSSGSVHQ EQSRRGQTVQ DLNHRLMDLA  300
RRLEDAKAKK AILRERLEAA AARGQACERI DNLEGLGLDE LDRLMESLGR LKARASARTK  360
EILTGTSPEP TAVDHVGPWR HGGISTVHSD SKGLGGQFPS NPWKDEEGKE RCVQVMQKTS  420
GPRSCLILSI PALLEPISTA KRFDHTTLMI GKAQSRNPVN AILVGGSAGG CGGSAVGRSS  480
GAPVALHRPN VTTAAVESLR GCVNVRYGVG RKGEAAYSIS IARLH

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60440.1	3e-27	M-type_MADS family protein