PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW31690.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 197aa MW: 22477.7 Da PI: 8.3959 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 92.6 | 1.8e-29 | 23 | 70 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krien++nrqvtf+kRrng+lKKA+ELSvLCda+va+i+fs++g+lye RWW31690.1 23 KRIENTTNRQVTFCKRRNGLLKKAYELSVLCDADVALIVFSTRGRLYE 70 79*********************************************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
SDEEEPATLE PPARMGRGKI EIKRIENTTN RQVTFCKRRN GLLKKAYELS VLCDADVALI 60 VFSTRGRLYE SEEGSQEDRR ERERECVCIA GWRAPRCVDK RGEGGIYTGS KGSEDLRELR 120 EGKRPIMSWD REQTWQRRTN GILEETKVGG KVCVCKKTGA KMGPWKSEHP LLLFDLPVFC 180 NVVVHVGLPF TFEKMGE |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.3 | 1e-33 | MIKC_MADS family protein |