PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW29520.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 654aa MW: 72844 Da PI: 8.9863 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 103.3 | 2.2e-32 | 2 | 93 | 9 | 100 |
DUF260 9 rrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 rr+C ++Cv+a fpa+++ +f+ vh++FGasnv++ll++l++e+r++a++slvyeA+ar+rdPv+G+v+ +++lq + ++ + +l+ +k+e RWW29520.1 2 RRRCRPECVFASGFPASNMVRFELVHRVFGASNVQRLLAQLRPEQRPEAADSLVYEADARVRDPVHGCVRYMRQLQDEWQKIQRQLHDAKKE 93 99************************************************************************************999887 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 654 aa Download sequence |
MRRRCRPECV FASGFPASNM VRFELVHRVF GASNVQRLLA QLRPEQRPEA ADSLVYEADA 60 RVRDPVHGCV RYMRQLQDEW QKIQRQLHDA KKELSAYLGP VAASPSLPQP YHPHRHLQGS 120 PLCSTTACGI SGMSTDADDR TTRGIIPGTG IGMGLDLGSS GTSGLDASDT STPPEMDIAK 180 GLYLDVPGTS RGIPTTGRRM GLNLDASSSG SPGMCTGTVL HPDAPVTSRH QQSLMHELEQ 240 QQQQQIMNVI AEREQLARSN LGLPDVRIDY KDQIGGGITL AAAAGPPSGL GLPLAQPFEG 300 PSAAQPQQYT EQQQPGLVPV RSLQGSSAAQ QHQQKRQHLS PVQPFQGSFA AQPQRCIQQH 360 HHMGFLPTQS ILGSSPLHPQ HHIQQQRQHL EMVPAQQSQG NYAAWLEQYI EQQHLPFQGA 420 SATQPRHQNE QQSQHHNEQP RQHPRLVPAQ TFQWQSAVQP PHYNRQQNHH RQRKHMDLAS 480 AQSIQWPSVA QPHHHTMQQH HQQWQHNQQR RHLLGLVPAQ PSLGPLAVQP QHRHTQQGQM 540 TLGLVPVPPF DGPFAAQLQQ SIHQHPQYET IQSDDLDYLW SLIDPSRGAT PSGHVFRATR 600 VIILPWPTDY EVVALPSKLR GGRHRTKYVA LLVSGVAVLL HFGPILEFPR LLHR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23660.2 | 5e-31 | LBD family protein |