PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | RWW28802.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 203aa MW: 22605.9 Da PI: 11.0372 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 85.2 | 3.9e-27 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krie+ + rqv fskRr g++KKA+ELSvLCdaev +++fs+ gklye+ss RWW28802.1 11 KRIEDRTSRQVRFSKRRSGLFKKAYELSVLCDAEVGLLVFSPAGKLYEFSS 61 79***********************************************96 PP |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 203 aa Download sequence |
MAPRRGKVEL KRIEDRTSRQ VRFSKRRSGL FKKAYELSVL CDAEVGLLVF SPAGKLYEFS 60 SVSRYSSLPS RTSAFQTNAG AGYRRHADAT LTSVGEDGNL TSEDAGGHRR GQTKPCVALM 120 RLPSGPRVAG VSKTFPPRLS HLFHSWSNTT LSPPTILARP AKRDVHAPGC CFFFFFPPWA 180 PSRVLDCVDG FRSFSFSLWT QRM |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G11880.1 | 3e-25 | MIKC_MADS family protein |