PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW28545.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 221aa MW: 24353.7 Da PI: 6.3578 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.5 | 1.1e-38 | 10 | 109 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 aCaaCk++rr+Ca+dC+la fpa+qpk+f n h+lFG+sn+lk++++l++ ++ +am+s++yeA++r rdPv+G++g+i +l+ q+++l+ el+++++ RWW28545.1 10 ACAACKYQRRRCAADCPLAAFFPADQPKQFLNCHRLFGVSNILKIINRLDPPQQAEAMKSIIYEANIRDRDPVHGCLGLICTLHLQIHHLELELEATNT 108 7*********************************************************************************************99988 PP DUF260 100 e 100 + RWW28545.1 109 Q 109 7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 221 aa Download sequence |
MTVKGGTNQA CAACKYQRRR CAADCPLAAF FPADQPKQFL NCHRLFGVSN ILKIINRLDP 60 PQQAEAMKSI IYEANIRDRD PVHGCLGLIC TLHLQIHHLE LELEATNTQL LLHRHHQLAA 120 SSSSSSSSTM IDGAATYLLL ENGISIVDSC SIGDNNDINM KAAETFWAHH SSALHAPMDD 180 EISPYFDAID EDGAYESRSN TCPHCLVRLP TIKITILIQT A |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 4e-43 | LBD family protein |