PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW28321.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | C3H | ||||||||
Protein Properties | Length: 212aa MW: 22196.3 Da PI: 8.8984 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 26.7 | 9.8e-09 | 16 | 41 | 2 | 27 |
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 kt+ C+ + Ck+Gd+C+FaHg+ RWW28321.1 16 KTRMCNKYNTADGCKFGDKCHFAHGE 41 89**********************96 PP | |||||||
2 | zf-CCCH | 40.1 | 6.2e-13 | 179 | 203 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 ykt+lC++fa+ G C +GdrC+FaHg RWW28321.1 179 YKTKLCDNFAK-GSCTFGDRCHFAHG 203 9**********.*************8 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 212 aa Download sequence |
MPPSTIPNGL PSSAVKTRMC NKYNTADGCK FGDKCHFAHG EWELGKPIIS SHDGHMAPSM 60 GGRYAANMEP PQPTGLAAAT SFGASATAKI SVDASLAGAI IGKGGMNTKQ ICRITGVKLA 120 IREHESDASL RNIELEGTFD QIKHASSMVR ELIVNVSSAT PLPPKISAAG APNALGGNYK 180 TKLCDNFAKG SCTFGDRCHF AHGASELRKT VP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06770.1 | 1e-54 | C3H family protein |