PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW26730.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LSD

Protein Properties

Length: 179aa MW: 18727.9 Da PI: 8.3311

Description

LSD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW26730.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-LSD1	36.7	6.7e-12	12	36	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C+gCr +L YPrGA sV+Ca+C t+ RWW26730.1 12 CSGCRSVLLYPRGAASVCCAICSTI 36 **********************997 PP
2	zf-LSD1	36.4	8.8e-12	51	75	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 CggCrtlL+ GA+ VRC++C+t+ RWW26730.1 51 CGGCRTLLMHVHGATTVRCSCCNTI 75 ***********************97 PP
3	zf-LSD1	44.6	2.3e-14	89	113	1	25
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25 C +C+t+L+YP+GApsV+Ca+C+ V RWW26730.1 89 CAHCHTTLMYPYGAPSVKCAICHYV 113 **********************987 PP

Sequence ? help Back to Top
Protein Sequence Length: 179 aa Download sequence
MITSGMQGQL VCSGCRSVLL YPRGAASVCC AICSTITTVP PPGMEMAQLI CGGCRTLLMH 60 VHGATTVRCS CCNTINITRP VNQVANVSCA HCHTTLMYPY GAPSVKCAIC HYVTNVGQMD 120 SMRVPVSTMH RLNGPTPAPP SASASQVQNT TVVVENPMSV DESGKLVSNL VVGVTTGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G20380.2	5e-60	LSD family protein