PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW25009.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LBD

Protein Properties

Length: 319aa MW: 34716.8 Da PI: 8.7665

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW25009.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	67	4.3e-21	114	163	1	50
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalp 50 +CaaCk+lrr+C++ Cv+ap+fpa++p+kfa vhk+FGasnv+kll+ l+ RWW25009.1 114 PCAACKLLRRRCTQVCVFAPHFPADEPEKFASVHKVFGASNVSKLLRVLS 163 7********************************************98765 PP
2	DUF260	53.4	7.7e-17	190	248	42	100
DUF260 42 vlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 ++ ++++ ++r da+sslvyeA+ar+rdPvyG+vg i++l+ q++ l+a+la+++++ RWW25009.1 190 ISARVQEIAAQHRGDAVSSLVYEANARVRDPVYGCVGAITSLHCQIQVLQAQLAVARAK 248 67789999**********************************************99876 PP

Sequence ? help Back to Top
Protein Sequence Length: 319 aa Download sequence
MTRIIAGIKD EVESSRFALP PTCCTGGSAS SHVPHRFENV CHRIAPLLLT PPWDCPANSA 60 PAYHTFFSFF LVYRRGLNDG FRHGQYEAVG ADKLKPGKCR RMKGEGRKHT TASPCAACKL 120 LRRRCTQVCV FAPHFPADEP EKFASVHKVF GASNVSKLLR VLSLSLSLSL SLSLALDEKH 180 GGDQTSQCEI SARVQEIAAQ HRGDAVSSLV YEANARVRDP VYGCVGAITS LHCQIQVLQA 240 QLAVARAKMV HLRTSNAAYL ARFSHTAMAT SSTSCTGSSF MSPAHKQLME PDTTKSVFPL 300 DLAMLDQSNL GEPPIWSSC

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G31320.1	1e-42	LBD family protein