PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW24480.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 228aa MW: 24887.9 Da PI: 6.4066 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.7 | 6.2e-36 | 7 | 97 | 1 | 90 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 +C aCk+lrrkCa++Cv+apyf +++ +++fa++hk+FGasnv kll +lp +r++a+ ++ yeA+ar+++P+yG+v++i++lqqq+++l RWW24480.1 7 PCGACKFLRRKCASGCVFAPYFHHQHgAAHFAAIHKVFGASNVAKLLMHLPMADRPEAAVTISYEAQARLQNPIYGCVAHIFALQQQVSNL 97 7*********************998879************************************************************986 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 228 aa Download sequence |
MAGLGSPCGA CKFLRRKCAS GCVFAPYFHH QHGAAHFAAI HKVFGASNVA KLLMHLPMAD 60 RPEAAVTISY EAQARLQNPI YGCVAHIFAL QQQVSNLVLA SLEAQAARRR GNGTASGTIR 120 QEEDMLCNTG PPHRQDLQGF FIDQAGSRKT PPQFASTLSM DVNCYPNSLW SFEENAPPTN 180 FDMADEDFSF EAFSLTSCFD TEDEFWRSAF HYGNGDLQPA ASTGVGRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 3e-45 | LBD family protein |