PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW23739.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 234aa MW: 25467.1 Da PI: 8.4296 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.2 | 1.4e-38 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+ap+f++e+ +++f ++hk+FGasnv+kll +lp+ +r++a+ ++ yeA+ar+ dPvyG+v++i++lq+q+ l+a+la+lk RWW23739.1 7 PCGACKFLRRKCVSGCVFAPHFCHEKgAAHFVAIHKVFGASNVSKLLMHLPPADRSEAVVTISYEAQARILDPVYGCVAHIFALQRQVVLLQAQLASLK 105 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ RWW23739.1 106 AQ 107 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence |
MAGCGSPCGA CKFLRRKCVS GCVFAPHFCH EKGAAHFVAI HKVFGASNVS KLLMHLPPAD 60 RSEAVVTISY EAQARILDPV YGCVAHIFAL QRQVVLLQAQ LASLKAQARL ALGNGTTSPG 120 EGIAPPTLAS NLSTNHWLAD SNSCRSSHDC NSHFAMVFRI QSEDAPRSMA SLDVQAGPWR 180 SSSSSSSYTD VEGLLSVAFA YPGRSFIRMQ IHYWMPHHCP FPIIDMHSFS YTRN |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 2e-47 | LBD family protein |