PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW20558.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 227aa MW: 24755.1 Da PI: 6.2195 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.7 | 6.1e-36 | 7 | 107 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf +eq +++fa+vhk+FGasn +kll +lp +r++a+ ++ yeA+ar++dP+yG+v++i++lqqq++ +e+++l+ RWW20558.1 7 PCGACKFLRRKCVRGCVFAPYFSHEQaAAHFAAVHKVFGASNASKLLMHLPVADRSEAALTISYEAQARLQDPIYGCVAHIFALQQQVSICCSEVVTLE 105 7***********************9978************************************************************99999988887 PP DUF260 99 ee 100 ++ RWW20558.1 106 AQ 107 76 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence |
MAGLGSPCGA CKFLRRKCVR GCVFAPYFSH EQAAAHFAAV HKVFGASNAS KLLMHLPVAD 60 RSEAALTISY EAQARLQDPI YGCVAHIFAL QQQVSICCSE VVTLEAQLAS LKAQTAQGVV 120 SGYSSSIPRL EEDRYSNKLP PYRPGESLPL MPQRLGADTP PNPEPMPCQD HELVDSNSFQ 180 SSQLELVDDN SSCAMATLDL EAYTWRSAHH HDMEDLRSVA FGRLNCA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G58190.1 | 6e-47 | LBD family protein |