PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW20522.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 161aa MW: 17973 Da PI: 11.5781 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 81.9 | 4e-26 | 11 | 60 | 2 | 51 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 r+e+ + rqv fskRr g++KKA+EL vLCdaeva+++fs+ gklye+ss RWW20522.1 11 RVEDRISRQVRFSKRRSGLFKKAYELAVLCDAEVALVVFSPAGKLYEFSS 60 789*********************************************96 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence |
MARRGRVELR RVEDRISRQV RFSKRRSGLF KKAYELAVLC DAEVALVVFS PAGKLYEFSS 60 ILRCATSPSP PPPSLVHGTM IANTTIPSHP PPLWIISFTI HVETLFIWSL GLRLPPLSFS 120 TKRQGGGTRL PMRKRERDPI VFAGDPSLPP SSLSSVDSHR L |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61120.1 | 1e-26 | MIKC_MADS family protein |