PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW19978.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 235aa MW: 26022.1 Da PI: 10.4354 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 58 | 1.2e-18 | 135 | 168 | 1 | 34 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-E CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdae 34 k+i+n+ rqvtfskRr g++KKA ELSvLCda+ RWW19978.1 135 KKIDNTAARQVTFSKRRRGLFKKAAELSVLCDAD 168 68******************************97 PP | |||||||
2 | K-box | 32.7 | 3e-12 | 168 | 218 | 37 | 87 |
K-box 37 hllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekel 87 + Ge Le+L+++eLqqLe+ Le +l ++ ++K l e+ +l++ + + RWW19978.1 168 DMRGEALEKLTVEELQQLEKTLEAGLGRVIDRKAAQLAEENVRLRRHVRPV 218 589*************************************99999887655 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 235 aa Download sequence |
MRTGALGWLV QNFSIDVAWA TLCVVVFLGW WDGPSICLLT PSGVHHIFPC LLDDETEQRP 60 IPSSQSELAA RGGASRNMRC ITPQTSNPPT PTVLCGTCAS LPSHNAPPRN AVGVGGRRKR 120 KRKKGEMVRE KIQIKKIDNT AARQVTFSKR RRGLFKKAAE LSVLCDADMR GEALEKLTVE 180 ELQQLEKTLE AGLGRVIDRK AAQLAEENVR LRRHVRPVYQ PSSSLSSLQN IDSMK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 117 | 122 | RRKRKR |
2 | 117 | 123 | RRKRKRK |
3 | 118 | 123 | RKRKRK |
4 | 118 | 124 | RRKRKRK |
5 | 120 | 124 | RKRKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22540.2 | 2e-20 | MIKC_MADS family protein |