PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW19972.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 80aa MW: 9367.87 Da PI: 10.4535 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 93.7 | 8.5e-30 | 9 | 56 | 1 | 48 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklye 48 krien++nrqvtf+kRrng+lKKA+ELS+LCdaeva+++fss+g+ly+ RWW19972.1 9 KRIENTTNRQVTFCKRRNGLLKKAYELSILCDAEVALVVFSSRGRLYD 56 79********************************************95 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 80 aa Download sequence |
MGRGKIEIKR IENTTNRQVT FCKRRNGLLK KAYELSILCD AEVALVVFSS RGRLYDCQAN 60 FGKYRIPRDG ERVCRVRRED |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G09960.2 | 2e-34 | MIKC_MADS family protein |