PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW19659.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 192aa MW: 21347.2 Da PI: 10.2724 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 34.2 | 3.2e-11 | 18 | 48 | 2 | 32 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCd 32 +i+nk r+++fskRr + KA+ELS+LC RWW19659.1 18 KIQNKDARYISFSKRRSVFFVKASELSTLCS 48 699***************************7 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 192 aa Download sequence |
MFKATKTTKG KQRIEMRKIQ NKDARYISFS KRRSVFFVKA SELSTLCSFD QVMNRFLSSA 60 ESPGRGRQSQ GGRAPGAVRG QDCKWLDDID ALGSDELDRI DVRTREILMG ANPESVAVDR 120 VGSSPHGGIA TVNPLEPGRP HPNPSIATID FVDISGSFEG IQVRQLVHSP NEVVRRIVYT 180 KTDSNITEKK ER |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-09 | M-type_MADS family protein |