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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
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| TF ID | RWW19656.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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| Family | LBD | ||||||||
| Protein Properties | Length: 269aa MW: 29674.6 Da PI: 10.375 | ||||||||
| Description | LBD family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | DUF260 | 126.4 | 1.4e-39 | 26 | 120 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99
+CaaCk+lrr+C+++Cv+apyfpa++p++fa+vh++FGasnv+kll++ r da+sslvyeA+ar+rdPvyG+v+ i++l++q++ l+a+la++++
RWW19656.1 26 PCAACKLLRRRCTQECVFAPYFPADEPHQFAIVHRVFGASNVSKLLQH-----RGDAVSSLVYEANARVRDPVYGCVAAISSLHRQIQALQAQLAVAHA 119
7*********************************************99.....*******************************************998 PP
DUF260 100 e 100
+
RWW19656.1 120 Q 120
7 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 269 aa Download sequence |
DTIPGLESIR RRRMKEEGRK NSPVSPCAAC KLLRRRCTQE CVFAPYFPAD EPHQFAIVHR 60 VFGASNVSKL LQHRGDAVSS LVYEANARVR DPVYGCVAAI SSLHRQIQAL QAQLAVAHAQ 120 MAHLRTQNAA YLARVGHGQI SMGGAGCSTS TGSSSSLSPK HHTLDMVALD QPGSKQAKRR 180 RGRPRKVVAE EEDKLKKKKK KKKKKADSGG EEEERKGAEE PSSSLAAPVA DDDGGREEVG 240 EMEPIQHQEE EDKPRSRTRR KSQQPRKST |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 10 | 20 | RRRRMKEEGRK |
| 2 | 178 | 200 | KRRRGRPRKVVAEEEDKLKKKKK |
| 3 | 178 | 205 | KRRRGRPRKVVAEEEDKLKKKKKKKKKK |
| 4 | 179 | 201 | KRRRGRPRKVVAEEEDKLKKKKK |
| 5 | 180 | 186 | RRGRPRK |
| 6 | 194 | 201 | KLKKKKKK |
| 7 | 196 | 202 | KKKKKKK |
| 8 | 196 | 204 | KKKKKKKKK |
| 9 | 196 | 205 | KKKKKKKKKK |
| 10 | 197 | 203 | KKKKKKK |
| 11 | 197 | 205 | KKKKKKKKK |
| 12 | 198 | 204 | KKKKKKK |
| 13 | 199 | 205 | KKKKKKK |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G31320.1 | 1e-46 | LBD family protein | ||||
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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