PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW18043.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 254aa MW: 27934.9 Da PI: 9.3966 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.7 | 7.4e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC+++C++ap+fp +qp+kfa vh++FGasnv kllk+l++e+reda+ sl yeAear+rdPv+G+vg i lq++l++++++l+ +k+ RWW18043.1 7 PCAACKLLRRKCTPECIFAPHFPPDQPAKFAKVHRVFGASNVAKLLKQLRPEQREDAVVSLSYEAEARLRDPVHGCVGYIYLLQHKLKEVQHDLSNAKR 105 7*********************************************************************************************99987 PP DUF260 100 e 100 e RWW18043.1 106 E 106 6 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 254 aa Download sequence |
MSSSSSPCAA CKLLRRKCTP ECIFAPHFPP DQPAKFAKVH RVFGASNVAK LLKQLRPEQR 60 EDAVVSLSYE AEARLRDPVH GCVGYIYLLQ HKLKEVQHDL SNAKRELSTY IGPVAFGPNL 120 PHHQLQGVSP SPYGIRGMGL GTGLALPAPA TWPQGQMVIM SEQHQHQRQQ MPEMHQAAVE 180 TPVTAREQEM LTSYPQIQGY DRMAGGAAVV ATVSAQLFNS PFAAQQRHPQ PQQYAERLWA 240 KARGEGRSGV NPSA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G66870.1 | 4e-62 | LBD family protein |