PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW16314.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 294aa MW: 30828 Da PI: 9.3385 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 129.6 | 1.4e-40 | 93 | 193 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l+ael++l+ RWW16314.1 93 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNLQAELSYLQ 191 7***********************9989********************************************************************999 PP DUF260 99 ee 100 ++ RWW16314.1 192 AH 193 86 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 294 aa Download sequence |
MTCDAEAEED GLPRGRRRGV LHLLPRHGAL ARHEPDGAAM RRYQLKRGKR RRRQSGDMSG 60 KSPSVGVVGG GSGGGGGGGS SGGGGSAGGG TGPCGACKFL RRKCVTGCIF APYFDSEQGA 120 AHFAAVHKVF GASNVSKLLL HIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQV 180 VNLQAELSYL QAHLATLELP SPPPPPPPPS LVASMPFSIS DLPSAASLPS TVDLSALFDP 240 LVQPSWPLQQ QQLSTSTRNL SESSGFGGGD LQALARELLD RQRTATSEPP PVSK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 45 | 51 | LKRGKRR |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 1e-73 | LBD family protein |