PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW16224.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 197aa MW: 20564.3 Da PI: 7.4358 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 117.6 | 7.6e-37 | 23 | 110 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqql 87 +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasn +kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqql RWW16224.1 23 PCGACKFLRRKCVTGCIFAPYFDSEQgAAHFAAVHKVFGASNASKLLLHIPAHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQL 110 7***********************9989**********************************************************97 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 197 aa Download sequence |
MSGSIAPNGG GGGGSGGGGG GGPCGACKFL RRKCVTGCIF APYFDSEQGA AHFAAVHKVF 60 GASNASKLLL HIPAHKRLDA VVTICYEAQA RLRDPVYGCV AHIFALQQQL PIPFSMSDLS 120 SSSTLPSTAD LSTLFDPPLL PSWPLQQQQR ITSTRSLSES SGCGGGDLQE LARELLLGRH 180 RLGDVIDEPG VQESKSI |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 4e-52 | LBD family protein |