PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW15306.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

LBD

Protein Properties

Length: 421aa MW: 45676.3 Da PI: 8.5687

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW15306.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	29.7	1.8e-09	85	112	1	28
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpk 28 +CaaCk+lrr+C++dC++apyf ++p+ RWW15306.1 85 PCAACKLLRRRCSQDCPFAPYFSPHEPQ 112 7*********************777665 PP
2	DUF260	37.3	7.6e-12	112	153	59	100
DUF260 59 sslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +slvyeA+ r+rdP+yG++g i++l+qq++ l+ el+++++e RWW15306.1 112 QSLVYEADLRLRDPIYGCMGAISALHQQVQALEFELQAVRAE 153 79***********************************99987 PP

Sequence ? help Back to Top
Protein Sequence Length: 421 aa Download sequence
MERRCEGNER SGGCEGGNQA TKLEQRCSGA AATEEHRWSR MLGNPAQGLG RIEEVGKKIK 60 READVVADRT GRRLGLVGTL NTITPCAACK LLRRRCSQDC PFAPYFSPHE PQSLVYEADL 120 RLRDPIYGCM GAISALHQQV QALEFELQAV RAEILKHKYR QASAGVIPTS HAALLAPSEE 180 VSMAAPPPRP VSSPPPVLVN PPAVLPNLTA GAREGADVSH LDHGSCEVGV EAAGAVAVGL 240 HLRVGGTAIV KLLIRVQETL HADEILVVVV VEGGRTAIDV GVGVNVRPEG DASCLANGWR 300 TESESRATKS LVERPRSENL EMRLLSEELG GGMLLLAADK LAVVESLLPS FTFQLRPPSF 360 RTSASISRRR DTRMIMGRGA TLTKQSWKKR RRRDAPIRFS FEIADWTALL TVLKRSGQDD 420 E

Sequence ? help Back to Top

Protein Sequence Length: 421 aa Download sequence

MERRCEGNER SGGCEGGNQA TKLEQRCSGA AATEEHRWSR MLGNPAQGLG RIEEVGKKIK  60
READVVADRT GRRLGLVGTL NTITPCAACK LLRRRCSQDC PFAPYFSPHE PQSLVYEADL  120
RLRDPIYGCM GAISALHQQV QALEFELQAV RAEILKHKYR QASAGVIPTS HAALLAPSEE  180
VSMAAPPPRP VSSPPPVLVN PPAVLPNLTA GAREGADVSH LDHGSCEVGV EAAGAVAVGL  240
HLRVGGTAIV KLLIRVQETL HADEILVVVV VEGGRTAIDV GVGVNVRPEG DASCLANGWR  300
TESESRATKS LVERPRSENL EMRLLSEELG GGMLLLAADK LAVVESLLPS FTFQLRPPSF  360
RTSASISRRR DTRMIMGRGA TLTKQSWKKR RRRDAPIRFS FEIADWTALL TVLKRSGQDD  420
E

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	388	393	KKRRRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40470.1	7e-42	LBD family protein