PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW12445.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

C3H

Protein Properties

Length: 677aa MW: 73745.5 Da PI: 9.735

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW12445.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	36.5	7.9e-12	394	417	4	27
---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 4 elCrffartGtCkyGdrCkFaHgp 27 + C +++rtGtC+yG+rC+++H++ RWW12445.1 394 PDCAYYMRTGTCSYGERCRYNHPR 417 68********************96 PP
2	zf-CCCH	37.9	3e-12	452	477	2	27
-S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 2 ktelCrffartGtCkyGdrCkFaHgp 27 ++++C ++++tG+Ck+G++CkF+H++ RWW12445.1 452 GEKECGYYMKTGQCKFGSTCKFHHPQ 477 5789********************97 PP
3	zf-CCCH	38.9	1.4e-12	620	646	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C+ff++tG Ck+G++Ck++H+p RWW12445.1 620 PGQPECQFFMKTGDCKFGAKCKYHHPP 646 5789*********************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 677 aa Download sequence
MGQSDSSKPT SDGQPQQHFG GTHVSPRDQV DSRPGIRDGG DWDRHSRDDP RDEPTDAQNL 60 SVSTKGQNCV GTPKADNSSR AYGPHQCSID QNIPYHIGAR RRAPSPVDSG DHPTMIYDPG 120 TYERVKLWLA ASTVTPAASV SGRGGALPGC RMTKKPSPIA RNTSLPLCLR TADTPPSALV 180 RSDPLFPRNQ RRSMEFGIYV DACPRDTTRP HGDASVADAI SLRSRSNPRL RDQRLCGSHM 240 QSVSASNTEP GERVSTRERV AKKHRLLETG RFPEQESTAK GAQRKSSSRS RNSSDRHRNR 300 SLRWPEFAPV PVTPLDPSIG YRSGTFQSPS HFRSDTHRRR RRRSRSMDMY GRDPALGGAR 360 PDPDTGLEGR SSVYSSIAPF YPALCFPGSS GVSPDCAYYM RTGTCSYGER CRYNHPRDRG 420 ALTGAGRTGV VEYPERVGQP VCEVFTLSII SGEKECGYYM KTGQCKFGST CKFHHPQPGG 480 ASVPSASAPA FYPSVQHPSV PSSHQYPPYA GWQVARPSVM PGSYLQGSYA PMLLSHGVVP 540 VQGWNPYPMS SFVALHTSQA SVNPVMSPAG QQTIQAEAIY GLESQASSTN PALPVPQIPS 600 LSPAGPSSTN QRGNIFPERP GQPECQFFMK TGDCKFGAKC KYHHPPGRRM PMTNVVLNAL 660 GLPLRPVHIS IAYCSVS

Sequence ? help Back to Top

Protein Sequence Length: 677 aa Download sequence

MGQSDSSKPT SDGQPQQHFG GTHVSPRDQV DSRPGIRDGG DWDRHSRDDP RDEPTDAQNL  60
SVSTKGQNCV GTPKADNSSR AYGPHQCSID QNIPYHIGAR RRAPSPVDSG DHPTMIYDPG  120
TYERVKLWLA ASTVTPAASV SGRGGALPGC RMTKKPSPIA RNTSLPLCLR TADTPPSALV  180
RSDPLFPRNQ RRSMEFGIYV DACPRDTTRP HGDASVADAI SLRSRSNPRL RDQRLCGSHM  240
QSVSASNTEP GERVSTRERV AKKHRLLETG RFPEQESTAK GAQRKSSSRS RNSSDRHRNR  300
SLRWPEFAPV PVTPLDPSIG YRSGTFQSPS HFRSDTHRRR RRRSRSMDMY GRDPALGGAR  360
PDPDTGLEGR SSVYSSIAPF YPALCFPGSS GVSPDCAYYM RTGTCSYGER CRYNHPRDRG  420
ALTGAGRTGV VEYPERVGQP VCEVFTLSII SGEKECGYYM KTGQCKFGST CKFHHPQPGG  480
ASVPSASAPA FYPSVQHPSV PSSHQYPPYA GWQVARPSVM PGSYLQGSYA PMLLSHGVVP  540
VQGWNPYPMS SFVALHTSQA SVNPVMSPAG QQTIQAEAIY GLESQASSTN PALPVPQIPS  600
LSPAGPSSTN QRGNIFPERP GQPECQFFMK TGDCKFGAKC KYHHPPGRRM PMTNVVLNAL  660
GLPLRPVHIS IAYCSVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	338	343	RRRRRR
2	338	345	RRRRRRSR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G47850.1	1e-72	C3H family protein