PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW12056.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 250aa MW: 27274.4 Da PI: 6.4099 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 123.7 | 9.2e-39 | 24 | 124 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C aCk+lrrkC+++Cv+apyf++eq ++fa++hk+FGasn +kll +lp +r++a+ ++ yeA+ar++dPvyG+v++i++lqqq+ +l+a+la+lk RWW12056.1 24 PCGACKFLRRKCVRGCVFAPYFCHEQgGAHFAAIHKVFGASNFSKLLLHLPVADRSEAAVTISYEAQARLQDPVYGCVAHIFALQQQVVNLQAQLASLK 122 7*************************88********************************************************************999 PP DUF260 99 ee 100 ++ RWW12056.1 123 AQ 124 87 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 250 aa Download sequence |
MLHSLATRNT ADFERPRMTG FGSPCGACKF LRRKCVRGCV FAPYFCHEQG GAHFAAIHKV 60 FGASNFSKLL LHLPVADRSE AAVTISYEAQ ARLQDPVYGC VAHIFALQQQ VVNLQAQLAS 120 LKAQAAQGLG SGSATNPTPQ EDKLSPFQQD GQRFFQTGDG GMLPPFSSIS SMSVENTNNY 180 SSGPSDPNYL QSSQEYDRHY EISDEHMPFG TEGGGSFAMA SPDMQTSTWR SAYHDMEDLQ 240 SIALAYLGRP |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42440.1 | 1e-51 | LBD family protein |