PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW11323.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 226aa MW: 25518.6 Da PI: 11.0398 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 139.4 | 1.2e-43 | 11 | 109 | 1 | 99 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +CaaCk+lrrkC ++C++apyfp e+p+kfanvhk+FGasnv kll++l +++reda++sl+yeAear++dPvyG+vg i+ lq+q+++l++el+++++ RWW11323.1 11 PCAACKFLRRKCIPGCIFAPYFPPEEPHKFANVHKIFGASNVAKLLNELFPHQREDAVNSLAYEAEARVKDPVYGCVGAISVLQRQVQRLQKELDAANA 109 7*********************************************************************************************99876 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence |
MASSSSSSNS PCAACKFLRR KCIPGCIFAP YFPPEEPHKF ANVHKIFGAS NVAKLLNELF 60 PHQREDAVNS LAYEAEARVK DPVYGCVGAI SVLQRQVQRL QKELDAANAD LLRYACNDIP 120 MGLPVPPTMV SPMGAYRRTE FSRRIGNRGG PFEQSANQKR PTGVSTLKKK KKKKKKNKKR 180 SDLTTGKTKQ TAQKLQLLRH QKHRQAERDL SLWRRLHLSS HRKQAK |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 168 | 174 | KKKKKKK |
2 | 168 | 176 | KKKKKKKKK |
3 | 168 | 179 | KKKKKKKKKNKK |
4 | 169 | 175 | KKKKKKK |
5 | 169 | 180 | KKKKKKKKKNKK |
6 | 170 | 176 | KKKKKKK |
7 | 170 | 181 | KKKKKKKKKNKK |
8 | 171 | 179 | KKKKKKKKK |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G63090.2 | 1e-70 | LBD family protein |