PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | RWW08864.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete
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Family | LBD | ||||||||
Protein Properties | Length: 200aa MW: 22036.3 Da PI: 8.397 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 109.6 | 2.3e-34 | 37 | 128 | 1 | 96 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelal 96 +C aCk+lrrkC++dC++apyf ++q p++fa++hk+FGasnv+kll+++p ++r +a+++++yeA+ar++dPvyG+v q q++q+ka+la+ RWW08864.1 37 PCGACKFLRRKCTSDCIFAPYFGSDQsPAQFAAIHKVFGASNVSKLLAQVPVHDRCEAVATIAYEAQARIKDPVYGSVL-----QAQVMQVKAQLAY 128 7*********************999989************************************************984.....4555555555544 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence |
MSLPTKAPIK TTCSLFRSLK PQQSIDLPSM ATGAGSPCGA CKFLRRKCTS DCIFAPYFGS 60 DQSPAQFAAI HKVFGASNVS KLLAQVPVHD RCEAVATIAY EAQARIKDPV YGSVLQAQVM 120 QVKAQLAYRA ALSRVLEDQQ CQDNFSVFLQ SDSEYGADGV LLMQQMGCRE DVSTQEFSRK 180 RTPHHEFGEL QAMAQRMMRS |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 2e-51 | LBD family protein |