PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

RWW05248.1

Organism

Ensete ventricosum

Taxonomic ID

4639

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Zingiberales; Musaceae; Ensete

Family

RAV

Protein Properties

Length: 356aa MW: 39833 Da PI: 9.6352

Description

RAV family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
RWW05248.1	genome	NCBI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	AP2	42.4	1.8e-13	53	101	1	55
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+ykGV + +grW A+I++ ++r++lg+f ++eAa+a++ a+++++g RWW05248.1 53 SQYKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEDEAARAYDVAAQRFRG 101 78**9888.8*****3.....5******99***********98 PP
2	B3	101.7	4e-32	180	281	1	96
EEEE-..-HHHHTT-EE--HHH.HTT......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 f+k+ tpsdv+k++rlv+pk++ae+h g +++ l +ed+ g++W+++++y+++s++yvltkGW++Fvk++gL++gD+v+F+++ e++l+ RWW05248.1 180 FDKAVTPSDVGKLNRLVIPKQHAEKHfplnqtGAAACKGVLLNFEDTCGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKGLRAGDVVTFQRSTGPEKQLF 278 89***********************8887755555999***********************************************8866777788 PP EEE CS B3 94 vkv 96 +++ RWW05248.1 279 IGW 281 877 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MDTSSLEDAC SEIEKQSPPP GPPKGLRRLG SGASVVLEPE ISIEAESRKL PSSQYKGVVP 60 QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDVAAQRFR GRDAVTNFRP LVETRDEDTA 120 ELSFLNSHSK AEIVDMLRKH TYLDELQQSK RSSGADKRRN HPSRGGVTGW FGGEHREHLF 180 DKAVTPSDVG KLNRLVIPKQ HAEKHFPLNQ TGAAACKGVL LNFEDTCGKV WRFRYSYWNS 240 SQSYVLTKGW SRFVKEKGLR AGDVVTFQRS TGPEKQLFIG WKTRPVAAHT ADGVQATIPP 300 FEVVRLFGVN IVKIPVAVAG DVSDRSGVAW AAKRTRDMEL ISSIELFKKQ CREEGL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MDTSSLEDAC SEIEKQSPPP GPPKGLRRLG SGASVVLEPE ISIEAESRKL PSSQYKGVVP  60
QPNGRWGAQI YEKHQRVWLG TFNEEDEAAR AYDVAAQRFR GRDAVTNFRP LVETRDEDTA  120
ELSFLNSHSK AEIVDMLRKH TYLDELQQSK RSSGADKRRN HPSRGGVTGW FGGEHREHLF  180
DKAVTPSDVG KLNRLVIPKQ HAEKHFPLNQ TGAAACKGVL LNFEDTCGKV WRFRYSYWNS  240
SQSYVLTKGW SRFVKEKGLR AGDVVTFQRS TGPEKQLFIG WKTRPVAAHT ADGVQATIPP  300
FEVVRLFGVN IVKIPVAVAG DVSDRSGVAW AAKRTRDMEL ISSIELFKKQ CREEGL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68840.2	1e-132	RAV family protein